Analysis of interatomic Contacts of Structural Units in PDB entry:
3GQH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GQH entry

There are 3 chains in PDB entry 3GQH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 692LYS 854
B
 ASP 692LYS 854
C
 ASP 692LYS 854
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 3GQH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
788 792Right-handed 310
Helix 2
2
B
788 792Right-handed 310
Helix 3
3
C
700 703Right-handed 310
Helix 4
4
C
781 785Right-handed 310
Helix 5
5
C
788 792Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 3GQH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
717 720first strand
Strand 2
A
710 714anti-parallel
Strand 3
A
729 731anti-parallel
Strand 4
A
795 808anti-parallel
Strand 5
A
693 698anti-parallel
Strand 6
A
737 739parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
717 720first strand
Strand 2
A
710 714anti-parallel
Strand 3
A
729 731anti-parallel
Strand 4
A
795 808anti-parallel
Strand 5
A
847 853anti-parallel
Strand 6
A
832 838anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
760 764first strand
Strand 2
A
770 774anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
817 821first strand
Strand 2
A
824 830anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
717 720first strand
Strand 2
B
710 714anti-parallel
Strand 3
B
729 731anti-parallel
Strand 4
B
795 808anti-parallel
Strand 5
B
693 698anti-parallel
Strand 6
B
737 739parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
717 720first strand
Strand 2
B
710 714anti-parallel
Strand 3
B
729 731anti-parallel
Strand 4
B
795 808anti-parallel
Strand 5
B
847 853anti-parallel
Strand 6
B
832 838anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
760 764first strand
Strand 2
B
770 774anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
817 821first strand
Strand 2
B
824 830anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
693 698first strand
Strand 2
C
795 808anti-parallel
Strand 3
C
729 731anti-parallel
Strand 4
C
710 714anti-parallel
Strand 5
C
717 720anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
693 698first strand
Strand 2
C
795 808anti-parallel
Strand 3
C
846 853anti-parallel
Strand 4
C
832 841anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
760 764first strand
Strand 2
C
770 774anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
817 821first strand
Strand 2
C
824 830anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il