Analysis of interatomic Contacts of Structural Units in PDB entry:
3GQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GQJ entry

There is 1 chain in PDB entry 3GQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 50LEU 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3GQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 66Right-handed alpha
Helix 2
2
A
68 74Right-handed alpha
Helix 3
3
A
86 101Right-handed alpha
Helix 4
4
A
103 112Right-handed alpha
Helix 5
5
A
122 136Right-handed alpha
Helix 6
6
A
142 150Right-handed alpha
Helix 7
7
A
154 162Right-handed alpha
Helix 8
8
A
212 219Right-handed alpha
Helix 9
9
A
220 223Right-handed 310
Helix 10
10
A
227 234Right-handed alpha
Helix 11
11
A
236 240Right-handed 310
Helix 12
12
A
244 255Right-handed alpha
Helix 13
13
A
282 297Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3GQJ.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 281first strand
Strand 2
A
169 176anti-parallel
Strand 3
A
181 187anti-parallel
Strand 4
A
195 199anti-parallel
Strand 5
A
225 226anti-parallel
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