Analysis of interatomic Contacts of Structural Units in PDB entry:
3GQQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3GQQ entry

There are 6 chains in PDB entry 3GQQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 57	SER 237
B	LYS 57	THR 239
C	ARG 56	GLY 238
D	LYS 57	THR 239
E	PRO 59	PRO 240
F	PRO 59	THR 239

There are 24 helices in PDB entry 3GQQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	61	65	Right-handed 310
Helix 2	2	A	78	82	Right-handed 310
Helix 3	3	A	134	140	Right-handed 310
Helix 4	4	A	200	210	Right-handed alpha
Helix 5	5	B	61	66	Right-handed alpha
Helix 6	6	B	78	82	Right-handed 310
Helix 7	7	B	134	140	Right-handed 310
Helix 8	8	B	200	210	Right-handed alpha
Helix 9	9	C	61	66	Right-handed alpha
Helix 10	10	C	78	82	Right-handed 310
Helix 11	11	C	134	140	Right-handed 310
Helix 12	12	C	200	210	Right-handed alpha
Helix 13	13	D	61	65	Right-handed 310
Helix 14	14	D	78	82	Right-handed 310
Helix 15	15	D	134	140	Right-handed 310
Helix 16	16	D	200	210	Right-handed alpha
Helix 17	17	E	61	65	Right-handed 310
Helix 18	18	E	78	82	Right-handed 310
Helix 19	19	E	134	140	Right-handed 310
Helix 20	20	E	200	210	Right-handed alpha
Helix 21	21	F	61	65	Right-handed 310
Helix 22	22	F	78	82	Right-handed 310
Helix 23	23	F	136	140	Right-handed 310
Helix 24	24	F	200	210	Right-handed alpha

There are 12 sheets in PDB entry 3GQQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	106	first strand
Strand 2	A	87	95	anti-parallel
Strand 3	A	142	150	anti-parallel
Strand 4	A	187	195	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	132	first strand
Strand 2	A	225	235	parallel
Strand 3	A	214	222	anti-parallel
Strand 4	A	159	167	anti-parallel
Strand 5	A	170	178	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	87	95	anti-parallel
Strand 3	B	142	150	anti-parallel
Strand 4	B	187	195	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	225	235	parallel
Strand 3	B	214	222	anti-parallel
Strand 4	B	160	167	anti-parallel
Strand 5	B	170	178	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	106	first strand
Strand 2	C	87	95	anti-parallel
Strand 3	C	142	150	anti-parallel
Strand 4	C	187	195	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	132	first strand
Strand 2	C	225	235	parallel
Strand 3	C	214	222	anti-parallel
Strand 4	C	160	167	anti-parallel
Strand 5	C	170	178	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	106	first strand
Strand 2	D	87	95	anti-parallel
Strand 3	D	142	150	anti-parallel
Strand 4	D	187	195	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	225	235	parallel
Strand 3	D	214	222	anti-parallel
Strand 4	D	159	167	anti-parallel
Strand 5	D	170	178	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	106	first strand
Strand 2	E	87	95	anti-parallel
Strand 3	E	142	150	anti-parallel
Strand 4	E	187	195	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	132	first strand
Strand 2	E	225	235	parallel
Strand 3	E	214	222	anti-parallel
Strand 4	E	159	167	anti-parallel
Strand 5	E	170	178	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	101	106	first strand
Strand 2	F	87	95	anti-parallel
Strand 3	F	142	150	anti-parallel
Strand 4	F	187	195	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	132	first strand
Strand 2	F	225	235	parallel
Strand 3	F	214	222	anti-parallel
Strand 4	F	159	167	anti-parallel
Strand 5	F	170	178	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3GQQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
3GQQ