Analysis of interatomic Contacts of Structural Units in PDB entry:
3GR8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GR8 entry

There are 2 chains in PDB entry 3GR8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 340
B
 MET 1PHE 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 3GR8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 51Right-handed alpha
Helix 2
2
A
64 68Right-handed 310
Helix 3
3
A
80 94Right-handed alpha
Helix 4
4
A
106 110Right-handed 310
Helix 5
5
A
135 157Right-handed alpha
Helix 6
6
A
169 176Right-handed alpha
Helix 7
7
A
189 206Right-handed alpha
Helix 8
8
A
227 229Right-handed 310
Helix 9
9
A
230 241Right-handed alpha
Helix 10
10
A
265 276Right-handed alpha
Helix 11
11
A
288 298Right-handed alpha
Helix 12
12
A
307 313Right-handed alpha
Helix 13
13
A
315 325Right-handed alpha
Helix 14
14
A
331 333Right-handed 310
Helix 15
15
A
334 339Right-handed alpha
Helix 16
16
B
38 51Right-handed alpha
Helix 17
17
B
64 68Right-handed 310
Helix 18
18
B
80 94Right-handed alpha
Helix 19
19
B
106 110Right-handed 310
Helix 20
20
B
135 157Right-handed alpha
Helix 21
21
B
169 176Right-handed alpha
Helix 22
22
B
189 206Right-handed alpha
Helix 23
23
B
227 229Right-handed 310
Helix 24
24
B
230 241Right-handed alpha
Helix 25
25
B
265 277Right-handed alpha
Helix 26
26
B
288 298Right-handed alpha
Helix 27
27
B
307 313Right-handed alpha
Helix 28
28
B
315 325Right-handed alpha
Helix 29
29
B
331 335Right-handed 310
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There are 6 sheets in PDB entry 3GR8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
14 16anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
55 62parallel
Strand 3
A
98 104parallel
Strand 4
A
160 165parallel
Strand 5
A
212 217parallel
Strand 6
A
245 249parallel
Strand 7
A
280 283parallel
Strand 8
A
303 306parallel
Strand 9
A
20 22parallel
Strand 10
A
55 62parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
132 133parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 11first strand
Strand 2
B
14 16anti-parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 75first strand
Strand 2
B
55 62parallel
Strand 3
B
98 104parallel
Strand 4
B
160 165parallel
Strand 5
B
212 217parallel
Strand 6
B
245 249parallel
Strand 7
B
280 283parallel
Strand 8
B
303 306parallel
Strand 9
B
20 22parallel
Strand 10
B
55 62parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 118first strand
Strand 2
B
132 133parallel
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