Analysis of interatomic Contacts of Structural Units in PDB entry:
3GR9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3GR9 entry

There are 16 chains in PDB entry 3GR9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 5	ASN 187
A	HIS 189	LYS 388
B	TYR 4	ASN 187
B	HIS 189	LYS 388
C	MET 1	ASN 187
C	HIS 189	LYS 388
D	SER 8	ASN 187
D	HIS 189	LYS 388
E	PRO 5	ASN 187
E	HIS 189	LEU 387
F	ASN 3	ASN 187
F	HIS 189	LYS 388
G	ILE 2	ASN 187
G	HIS 189	LYS 388
H	SER 8	ASN 187
H	HIS 189	LYS 388

There are123 helices in PDB entry 3GR9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	12	26	Right-handed alpha
Helix 2	2	A	31	46	Right-handed alpha
Helix 3	3	A	55	67	Right-handed alpha
Helix 4	4	A	88	91	Right-handed 310
Helix 5	5	A	92	99	Right-handed alpha
Helix 6	6	A	115	123	Right-handed alpha
Helix 7	7	A	135	138	Right-handed 310
Helix 8	8	A	141	150	Right-handed alpha
Helix 9	9	A	202	214	Right-handed alpha
Helix 10	10	A	234	239	Right-handed alpha
Helix 11	11	A	252	285	Right-handed alpha
Helix 12	12	A	315	326	Right-handed alpha
Helix 13	13	A	337	340	Right-handed 310
Helix 14	14	A	341	346	Right-handed alpha
Helix 15	15	A	356	365	Right-handed alpha
Helix 16	16	A	376	387	Right-handed alpha
Helix 17	17	B	12	26	Right-handed alpha
Helix 18	18	B	31	46	Right-handed alpha
Helix 19	19	B	55	70	Right-handed alpha
Helix 20	20	B	88	98	Right-handed alpha
Helix 21	21	B	115	123	Right-handed alpha
Helix 22	22	B	135	138	Right-handed 310
Helix 23	23	B	141	150	Right-handed alpha
Helix 24	24	B	202	214	Right-handed alpha
Helix 25	25	B	234	239	Right-handed alpha
Helix 26	26	B	252	285	Right-handed alpha
Helix 27	27	B	315	326	Right-handed alpha
Helix 28	28	B	337	340	Right-handed 310
Helix 29	29	B	341	346	Right-handed alpha
Helix 30	30	B	356	365	Right-handed alpha
Helix 31	31	B	376	387	Right-handed alpha
Helix 32	32	C	12	24	Right-handed alpha
Helix 33	33	C	31	46	Right-handed alpha
Helix 34	34	C	55	67	Right-handed alpha
Helix 35	35	C	88	98	Right-handed alpha
Helix 36	36	C	115	123	Right-handed alpha
Helix 37	37	C	135	138	Right-handed 310
Helix 38	38	C	141	150	Right-handed alpha
Helix 39	39	C	202	213	Right-handed alpha
Helix 40	40	C	234	239	Right-handed alpha
Helix 41	41	C	252	284	Right-handed alpha
Helix 42	42	C	315	326	Right-handed alpha
Helix 43	43	C	337	340	Right-handed 310
Helix 44	44	C	341	346	Right-handed alpha
Helix 45	45	C	356	365	Right-handed alpha
Helix 46	46	C	376	387	Right-handed alpha
Helix 47	47	D	12	26	Right-handed alpha
Helix 48	48	D	31	46	Right-handed alpha
Helix 49	49	D	55	67	Right-handed alpha
Helix 50	50	D	88	98	Right-handed alpha
Helix 51	51	D	115	123	Right-handed alpha
Helix 52	52	D	135	138	Right-handed 310
Helix 53	53	D	141	150	Right-handed alpha
Helix 54	54	D	202	214	Right-handed alpha
Helix 55	55	D	234	239	Right-handed alpha
Helix 56	56	D	252	285	Right-handed alpha
Helix 57	57	D	315	326	Right-handed alpha
Helix 58	58	D	337	340	Right-handed 310
Helix 59	59	D	341	346	Right-handed alpha
Helix 60	60	D	356	365	Right-handed alpha
Helix 61	61	D	376	387	Right-handed alpha
Helix 62	62	E	12	26	Right-handed alpha
Helix 63	63	E	31	46	Right-handed alpha
Helix 64	64	E	55	69	Right-handed alpha
Helix 65	65	E	88	91	Right-handed 310
Helix 66	66	E	92	98	Right-handed alpha
Helix 67	67	E	115	123	Right-handed alpha
Helix 68	68	E	135	138	Right-handed 310
Helix 69	69	E	141	150	Right-handed alpha
Helix 70	70	E	202	214	Right-handed alpha
Helix 71	71	E	234	239	Right-handed alpha
Helix 72	72	E	252	285	Right-handed alpha
Helix 73	73	E	315	325	Right-handed alpha
Helix 74	74	E	337	340	Right-handed 310
Helix 75	75	E	341	346	Right-handed alpha
Helix 76	76	E	356	365	Right-handed alpha
Helix 77	77	E	376	387	Right-handed alpha
Helix 78	78	F	12	26	Right-handed alpha
Helix 79	79	F	31	46	Right-handed alpha
Helix 80	80	F	55	67	Right-handed alpha
Helix 81	81	F	88	98	Right-handed alpha
Helix 82	82	F	115	123	Right-handed alpha
Helix 83	83	F	134	138	Right-handed 310
Helix 84	84	F	141	150	Right-handed alpha
Helix 85	85	F	202	214	Right-handed alpha
Helix 86	86	F	234	239	Right-handed alpha
Helix 87	87	F	252	284	Right-handed alpha
Helix 88	88	F	315	326	Right-handed alpha
Helix 89	89	F	337	340	Right-handed 310
Helix 90	90	F	341	346	Right-handed alpha
Helix 91	91	F	356	365	Right-handed alpha
Helix 92	92	F	376	387	Right-handed alpha
Helix 93	93	G	13	26	Right-handed alpha
Helix 94	94	G	31	46	Right-handed alpha
Helix 95	95	G	55	70	Right-handed alpha
Helix 96	96	G	88	98	Right-handed alpha
Helix 97	97	G	115	123	Right-handed alpha
Helix 98	98	G	135	138	Right-handed 310
Helix 99	99	G	141	150	Right-handed alpha
Helix 100	100	G	202	214	Right-handed alpha
Helix 101	101	G	234	239	Right-handed alpha
Helix 102	102	G	252	285	Right-handed alpha
Helix 103	103	G	315	325	Right-handed alpha
Helix 104	104	G	337	340	Right-handed 310
Helix 105	105	G	341	346	Right-handed alpha
Helix 106	106	G	356	365	Right-handed alpha
Helix 107	107	G	376	387	Right-handed alpha
Helix 108	108	H	13	26	Right-handed alpha
Helix 109	109	H	31	46	Right-handed alpha
Helix 110	110	H	55	67	Right-handed alpha
Helix 111	111	H	88	91	Right-handed 310
Helix 112	112	H	92	98	Right-handed alpha
Helix 113	113	H	115	123	Right-handed alpha
Helix 114	114	H	135	138	Right-handed 310
Helix 115	115	H	141	150	Right-handed alpha
Helix 116	116	H	202	214	Right-handed alpha
Helix 117	117	H	234	239	Right-handed alpha
Helix 118	118	H	252	285	Right-handed alpha
Helix 119	119	H	315	325	Right-handed alpha
Helix 120	120	H	337	340	Right-handed 310
Helix 121	121	H	341	346	Right-handed alpha
Helix 122	122	H	356	365	Right-handed alpha
Helix 123	123	H	376	387	Right-handed alpha

There are 27 sheets in PDB entry 3GR9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	53	first strand
Strand 2	A	196	200	anti-parallel
Strand 3	A	179	183	anti-parallel
Strand 4	A	155	159	parallel
Strand 5	A	127	133	parallel
Strand 6	A	80	84	parallel
Strand 7	A	101	105	parallel
Strand 8	A	349	352	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	171	172	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	225	first strand
Strand 2	A	229	230	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	303	308	anti-parallel
Strand 3	A	366	370	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	53	first strand
Strand 2	B	196	200	anti-parallel
Strand 3	B	179	183	anti-parallel
Strand 4	B	155	159	parallel
Strand 5	B	127	133	parallel
Strand 6	B	80	84	parallel
Strand 7	B	101	105	parallel
Strand 8	B	349	353	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	225	first strand
Strand 2	B	229	230	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	303	308	anti-parallel
Strand 3	B	366	370	anti-parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	53	first strand
Strand 2	C	196	200	anti-parallel
Strand 3	C	179	183	anti-parallel
Strand 4	C	155	159	parallel
Strand 5	C	129	133	parallel
Strand 6	C	80	84	parallel
Strand 7	C	101	105	parallel
Strand 8	C	349	352	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	225	first strand
Strand 2	C	229	230	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	291	first strand
Strand 2	C	303	308	anti-parallel
Strand 3	C	366	370	anti-parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	53	first strand
Strand 2	D	196	200	anti-parallel
Strand 3	D	180	183	anti-parallel
Strand 4	D	155	159	parallel
Strand 5	D	127	133	parallel
Strand 6	D	80	84	parallel
Strand 7	D	101	105	parallel
Strand 8	D	350	352	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	168	first strand
Strand 2	D	171	172	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	225	first strand
Strand 2	D	229	230	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	290	291	first strand
Strand 2	D	303	308	anti-parallel
Strand 3	D	366	370	anti-parallel

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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	53	first strand
Strand 2	E	196	200	anti-parallel
Strand 3	E	179	183	anti-parallel
Strand 4	E	155	159	parallel
Strand 5	E	127	133	parallel
Strand 6	E	80	84	parallel
Strand 7	E	101	105	parallel
Strand 8	E	350	352	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	168	first strand
Strand 2	E	171	172	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	290	292	first strand
Strand 2	E	303	308	anti-parallel
Strand 3	E	366	370	anti-parallel
Strand 4	E	330	331	anti-parallel

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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	53	first strand
Strand 2	F	196	200	anti-parallel
Strand 3	F	179	183	anti-parallel
Strand 4	F	155	159	parallel
Strand 5	F	127	132	parallel
Strand 6	F	80	84	parallel
Strand 7	F	101	105	parallel
Strand 8	F	349	352	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	167	168	first strand
Strand 2	F	171	172	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	290	292	first strand
Strand 2	F	303	308	anti-parallel
Strand 3	F	366	370	anti-parallel

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There are 8 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	49	53	first strand
Strand 2	G	196	200	anti-parallel
Strand 3	G	179	183	anti-parallel
Strand 4	G	155	159	parallel
Strand 5	G	127	133	parallel
Strand 6	G	80	84	parallel
Strand 7	G	101	105	parallel
Strand 8	G	349	352	parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	167	168	first strand
Strand 2	G	171	172	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	290	292	first strand
Strand 2	G	303	308	anti-parallel
Strand 3	G	366	370	anti-parallel

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There are 8 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	53	first strand
Strand 2	H	196	200	anti-parallel
Strand 3	H	179	183	anti-parallel
Strand 4	H	155	159	parallel
Strand 5	H	127	133	parallel
Strand 6	H	80	84	parallel
Strand 7	H	101	105	parallel
Strand 8	H	350	352	parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	167	168	first strand
Strand 2	H	171	172	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	224	225	first strand
Strand 2	H	229	230	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	290	291	first strand
Strand 2	H	303	308	anti-parallel
Strand 3	H	366	370	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3GR9

Analysis of interatomic Contacts of Structural Units in PDB entry:
3GR9