Analysis of interatomic Contacts of Structural Units in PDB entry:
3GRC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GRC entry

There are 4 chains in PDB entry 3GRC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 546ALA 670
B
 PRO 546ASN 668
C
 PRO 546ALA 670
D
 PRO 546ALA 670
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 3GRC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
556 570Right-handed alpha
Helix 2
2
A
579 590Right-handed alpha
Helix 3
3
A
605 615Right-handed alpha
Helix 4
4
A
616 620Right-handed 310
Helix 5
5
A
630 639Right-handed alpha
Helix 6
6
A
654 670Right-handed alpha
Helix 7
7
B
556 570Right-handed alpha
Helix 8
8
B
579 588Right-handed alpha
Helix 9
9
B
605 616Right-handed alpha
Helix 10
10
B
630 637Right-handed alpha
Helix 11
11
B
654 665Right-handed alpha
Helix 12
12
C
556 570Right-handed alpha
Helix 13
13
C
579 590Right-handed alpha
Helix 14
14
C
605 616Right-handed alpha
Helix 15
15
C
630 636Right-handed alpha
Helix 16
16
C
640 644Right-handed 310
Helix 17
17
C
654 669Right-handed alpha
Helix 18
18
D
556 570Right-handed alpha
Helix 19
19
D
579 588Right-handed alpha
Helix 20
20
D
605 616Right-handed alpha
Helix 21
21
D
630 638Right-handed alpha
Helix 22
22
D
654 670Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3GRC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 577first strand
Strand 2
A
549 553parallel
Strand 3
A
594 597parallel
Strand 4
A
623 627parallel
Strand 5
A
647 649parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
573 577first strand
Strand 2
B
549 553parallel
Strand 3
B
594 597parallel
Strand 4
B
623 627parallel
Strand 5
B
647 649parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
573 577first strand
Strand 2
C
549 553parallel
Strand 3
C
594 597parallel
Strand 4
C
623 627parallel
Strand 5
C
647 649parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
573 577first strand
Strand 2
D
549 553parallel
Strand 3
D
594 597parallel
Strand 4
D
623 627parallel
Strand 5
D
647 649parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il