Analysis of interatomic Contacts of Structural Units in PDB entry:
3GRK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GRK entry

There are 8 chains in PDB entry 3GRK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6MET 259
B
 GLY 6MET 259
C
 GLY 6MET 259
D
 GLY 6MET 259
E
 GLY 6MET 259
F
 GLY 6MET 259
G
 GLY 6MET 259
H
 GLY 6MET 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are105 helices in PDB entry 3GRK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 35Right-handed alpha
Helix 2
2
A
45 59Right-handed alpha
Helix 3
3
A
71 86Right-handed alpha
Helix 4
4
A
100 105Right-handed alpha
Helix 5
5
A
106 111Right-handed 310
Helix 6
6
A
112 124Right-handed alpha
Helix 7
7
A
124 138Right-handed alpha
Helix 8
8
A
149 153Right-handed 310
Helix 9
9
A
160 181Right-handed alpha
Helix 10
10
A
205 217Right-handed alpha
Helix 11
11
A
224 237Right-handed alpha
Helix 12
12
A
238 241Right-handed 310
Helix 13
13
A
253 257Right-handed 310
Helix 14
14
B
23 35Right-handed alpha
Helix 15
15
B
48 59Right-handed alpha
Helix 16
16
B
71 86Right-handed alpha
Helix 17
17
B
100 106Right-handed alpha
Helix 18
18
B
107 111Right-handed 310
Helix 19
19
B
112 124Right-handed alpha
Helix 20
20
B
124 138Right-handed alpha
Helix 21
21
B
149 153Right-handed 310
Helix 22
22
B
159 181Right-handed alpha
Helix 23
23
B
205 217Right-handed alpha
Helix 24
24
B
224 237Right-handed alpha
Helix 25
25
B
238 241Right-handed 310
Helix 26
26
B
253 257Right-handed 310
Helix 27
27
C
23 35Right-handed alpha
Helix 28
28
C
45 59Right-handed alpha
Helix 29
29
C
71 86Right-handed alpha
Helix 30
30
C
100 106Right-handed alpha
Helix 31
31
C
107 111Right-handed 310
Helix 32
32
C
112 124Right-handed alpha
Helix 33
33
C
124 138Right-handed alpha
Helix 34
34
C
149 153Right-handed 310
Helix 35
35
C
159 181Right-handed alpha
Helix 36
36
C
205 217Right-handed alpha
Helix 37
37
C
224 237Right-handed alpha
Helix 38
38
C
238 241Right-handed 310
Helix 39
39
C
253 257Right-handed 310
Helix 40
40
D
23 35Right-handed alpha
Helix 41
41
D
45 60Right-handed alpha
Helix 42
42
D
71 86Right-handed alpha
Helix 43
43
D
100 105Right-handed alpha
Helix 44
44
D
106 111Right-handed 310
Helix 45
45
D
112 124Right-handed alpha
Helix 46
46
D
124 138Right-handed alpha
Helix 47
47
D
149 153Right-handed 310
Helix 48
48
D
159 181Right-handed alpha
Helix 49
49
D
205 217Right-handed alpha
Helix 50
50
D
224 237Right-handed alpha
Helix 51
51
D
238 241Right-handed 310
Helix 52
52
D
253 257Right-handed 310
Helix 53
53
E
23 35Right-handed alpha
Helix 54
54
E
48 59Right-handed alpha
Helix 55
55
E
71 87Right-handed alpha
Helix 56
56
E
100 105Right-handed alpha
Helix 57
57
E
106 111Right-handed 310
Helix 58
58
E
112 124Right-handed alpha
Helix 59
59
E
124 137Right-handed alpha
Helix 60
60
E
149 153Right-handed 310
Helix 61
61
E
160 181Right-handed alpha
Helix 62
62
E
205 217Right-handed alpha
Helix 63
63
E
224 237Right-handed alpha
Helix 64
64
E
238 241Right-handed 310
Helix 65
65
E
253 257Right-handed 310
Helix 66
66
F
23 35Right-handed alpha
Helix 67
67
F
45 59Right-handed alpha
Helix 68
68
F
71 87Right-handed alpha
Helix 69
69
F
100 106Right-handed alpha
Helix 70
70
F
107 111Right-handed 310
Helix 71
71
F
112 124Right-handed alpha
Helix 72
72
F
124 138Right-handed alpha
Helix 73
73
F
149 153Right-handed 310
Helix 74
74
F
159 181Right-handed alpha
Helix 75
75
F
205 217Right-handed alpha
Helix 76
76
F
224 237Right-handed alpha
Helix 77
77
F
238 241Right-handed 310
Helix 78
78
F
253 257Right-handed 310
Helix 79
79
G
23 35Right-handed alpha
Helix 80
80
G
45 47Right-handed 310
Helix 81
81
G
48 59Right-handed alpha
Helix 82
82
G
71 87Right-handed alpha
Helix 83
83
G
100 106Right-handed alpha
Helix 84
84
G
107 111Right-handed 310
Helix 85
85
G
112 124Right-handed alpha
Helix 86
86
G
124 138Right-handed alpha
Helix 87
87
G
149 153Right-handed 310
Helix 88
88
G
159 181Right-handed alpha
Helix 89
89
G
205 217Right-handed alpha
Helix 90
90
G
224 237Right-handed alpha
Helix 91
91
G
238 241Right-handed 310
Helix 92
92
G
253 257Right-handed 310
Helix 93
93
H
23 35Right-handed alpha
Helix 94
94
H
48 59Right-handed alpha
Helix 95
95
H
71 86Right-handed alpha
Helix 96
96
H
100 105Right-handed alpha
Helix 97
97
H
107 111Right-handed 310
Helix 98
98
H
112 124Right-handed alpha
Helix 99
99
H
124 138Right-handed alpha
Helix 100
100
H
149 153Right-handed 310
Helix 101
101
H
159 181Right-handed alpha
Helix 102
102
H
205 217Right-handed alpha
Helix 103
103
H
224 237Right-handed alpha
Helix 104
104
H
238 241Right-handed 310
Helix 105
105
H
253 257Right-handed 310
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There are 8 sheets in PDB entry 3GRK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
38 43parallel
Strand 3
A
12 16parallel
Strand 4
A
91 94parallel
Strand 5
A
142 148parallel
Strand 6
A
185 192parallel
Strand 7
A
247 250parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 67first strand
Strand 2
B
38 44parallel
Strand 3
B
12 16parallel
Strand 4
B
91 94parallel
Strand 5
B
142 148parallel
Strand 6
B
185 192parallel
Strand 7
B
247 250parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 66first strand
Strand 2
C
38 43parallel
Strand 3
C
12 16parallel
Strand 4
C
91 94parallel
Strand 5
C
142 148parallel
Strand 6
C
185 192parallel
Strand 7
C
246 250parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 66first strand
Strand 2
D
38 43parallel
Strand 3
D
12 16parallel
Strand 4
D
91 94parallel
Strand 5
D
142 148parallel
Strand 6
D
185 192parallel
Strand 7
D
247 250parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
62 67first strand
Strand 2
E
38 44parallel
Strand 3
E
12 16parallel
Strand 4
E
91 94parallel
Strand 5
E
142 148parallel
Strand 6
E
185 192parallel
Strand 7
E
246 250parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
62 66first strand
Strand 2
F
38 43parallel
Strand 3
F
12 16parallel
Strand 4
F
91 94parallel
Strand 5
F
142 148parallel
Strand 6
F
185 192parallel
Strand 7
F
247 250parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
62 66first strand
Strand 2
G
38 43parallel
Strand 3
G
12 16parallel
Strand 4
G
91 94parallel
Strand 5
G
142 148parallel
Strand 6
G
185 192parallel
Strand 7
G
247 250parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
62 66first strand
Strand 2
H
38 43parallel
Strand 3
H
12 16parallel
Strand 4
H
91 94parallel
Strand 5
H
142 148parallel
Strand 6
H
185 192parallel
Strand 7
H
247 250parallel
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