Analysis of interatomic Contacts of Structural Units in PDB entry:
3GRO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GRO entry

There are 2 chains in PDB entry 3GRO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 30GLY 306
B
 ALA 31LEU 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3GRO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 62Right-handed alpha
Helix 2
2
A
75 86Right-handed alpha
Helix 3
3
A
87 102Right-handed alpha
Helix 4
4
A
103 106Right-handed 310
Helix 5
5
A
115 128Right-handed alpha
Helix 6
6
A
156 171Right-handed alpha
Helix 7
7
A
173 178Right-handed alpha
Helix 8
8
A
180 186Right-handed 310
Helix 9
9
A
191 199Right-handed alpha
Helix 10
10
A
201 206Right-handed alpha
Helix 11
11
A
212 221Right-handed alpha
Helix 12
12
A
238 244Right-handed 310
Helix 13
13
A
257 260Right-handed 310
Helix 14
14
A
261 266Right-handed alpha
Helix 15
15
A
270 277Right-handed alpha
Helix 16
16
A
293 301Right-handed alpha
Helix 17
17
A
302 306Right-handed 310
Helix 18
18
B
50 62Right-handed alpha
Helix 19
19
B
75 86Right-handed alpha
Helix 20
20
B
87 102Right-handed alpha
Helix 21
21
B
103 106Right-handed 310
Helix 22
22
B
116 128Right-handed alpha
Helix 23
23
B
156 171Right-handed alpha
Helix 24
24
B
173 178Right-handed alpha
Helix 25
25
B
180 185Right-handed alpha
Helix 26
26
B
191 199Right-handed alpha
Helix 27
27
B
201 206Right-handed alpha
Helix 28
28
B
212 220Right-handed alpha
Helix 29
29
B
238 244Right-handed 310
Helix 30
30
B
257 260Right-handed 310
Helix 31
31
B
261 266Right-handed alpha
Helix 32
32
B
270 277Right-handed alpha
Helix 33
33
B
293 301Right-handed alpha
Helix 34
34
B
302 305Right-handed 310
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There are 4 sheets in PDB entry 3GRO. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
35 38parallel
Strand 3
A
109 114parallel
Strand 4
A
133 139parallel
Strand 5
A
224 230parallel
Strand 6
A
280 285parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
255 256anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 69first strand
Strand 2
B
35 38parallel
Strand 3
B
109 114parallel
Strand 4
B
133 139parallel
Strand 5
B
224 230parallel
Strand 6
B
280 285parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 247first strand
Strand 2
B
255 256anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il