Analysis of interatomic Contacts of Structural Units in PDB entry:
3GS6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GS6 entry

There is 1 chain in PDB entry 3GS6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 3GS6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 22Right-handed alpha
Helix 2
2
A
32 36Right-handed 310
Helix 3
3
A
38 54Right-handed alpha
Helix 4
4
A
80 87Right-handed 310
Helix 5
5
A
89 107Right-handed alpha
Helix 6
6
A
127 131Right-handed 310
Helix 7
7
A
135 153Right-handed alpha
Helix 8
8
A
184 197Right-handed alpha
Helix 9
9
A
217 220Right-handed 310
Helix 10
10
A
221 226Right-handed alpha
Helix 11
11
A
254 266Right-handed alpha
Helix 12
12
A
275 286Right-handed alpha
Helix 13
13
A
291 298Right-handed 310
Helix 14
14
A
304 309Right-handed alpha
Helix 15
15
A
311 329Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3GS6. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
58 61parallel
Strand 3
A
26 31parallel
Strand 4
A
4 6parallel
Strand 5
A
269 271parallel
Strand 6
A
238 243parallel
Strand 7
A
202 205parallel
Strand 8
A
158 162parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
68 69anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il