Analysis of interatomic Contacts of Structural Units in PDB entry:
3GSB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GSB entry

There are 2 chains in PDB entry 3GSB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 7LEU 433
B
 PHE 7LEU 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 3GSB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 23Right-handed alpha
Helix 2
2
A
24 27Right-handed 310
Helix 3
3
A
29 33Right-handed 310
Helix 4
4
A
64 68Right-handed 310
Helix 5
5
A
76 88Right-handed alpha
Helix 6
6
A
97 111Right-handed alpha
Helix 7
7
A
122 139Right-handed alpha
Helix 8
8
A
154 158Right-handed 310
Helix 9
9
A
162 169Right-handed alpha
Helix 10
10
A
177 182Right-handed alpha
Helix 11
11
A
191 201Right-handed alpha
Helix 12
12
A
226 238Right-handed alpha
Helix 13
13
A
257 262Right-handed alpha
Helix 14
14
A
272 276Right-handed 310
Helix 15
15
A
287 292Right-handed alpha
Helix 16
16
A
309 324Right-handed alpha
Helix 17
17
A
327 350Right-handed alpha
Helix 18
18
A
374 379Right-handed alpha
Helix 19
19
A
382 395Right-handed alpha
Helix 20
20
A
415 431Right-handed alpha
Helix 21
21
B
9 23Right-handed alpha
Helix 22
22
B
24 27Right-handed 310
Helix 23
23
B
29 34Right-handed 310
Helix 24
24
B
34 38Right-handed 310
Helix 25
25
B
64 68Right-handed 310
Helix 26
26
B
76 87Right-handed alpha
Helix 27
27
B
88 90Right-handed 310
Helix 28
28
B
97 111Right-handed alpha
Helix 29
29
B
122 139Right-handed alpha
Helix 30
30
B
191 201Right-handed alpha
Helix 31
31
B
226 239Right-handed alpha
Helix 32
32
B
256 262Right-handed alpha
Helix 33
33
B
274 277Right-handed 310
Helix 34
34
B
287 292Right-handed alpha
Helix 35
35
B
309 324Right-handed alpha
Helix 36
36
B
327 350Right-handed alpha
Helix 37
37
B
374 379Right-handed alpha
Helix 38
38
B
382 396Right-handed alpha
Helix 39
39
B
415 431Right-handed alpha
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There are 6 sheets in PDB entry 3GSB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 48first strand
Strand 2
A
51 54anti-parallel
Strand 3
A
59 62anti-parallel
Strand 4
A
398 399parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
282 286anti-parallel
Strand 3
A
268 271anti-parallel
Strand 4
A
241 245parallel
Strand 5
A
206 211parallel
Strand 6
A
142 146parallel
Strand 7
A
184 187parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 359first strand
Strand 2
A
362 366anti-parallel
Strand 3
A
408 409anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 48first strand
Strand 2
B
51 54anti-parallel
Strand 3
B
59 62anti-parallel
Strand 4
B
398 399parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 120first strand
Strand 2
B
282 286anti-parallel
Strand 3
B
268 272anti-parallel
Strand 4
B
241 245parallel
Strand 5
B
206 211parallel
Strand 6
B
142 146parallel
Strand 7
B
184 187parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 359first strand
Strand 2
B
362 366anti-parallel
Strand 3
B
408 409anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il