Analysis of interatomic Contacts of Structural Units in PDB entry:
3GT8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GT8 entry

There are 5 chains in PDB entry 3GT8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 677MET 983
A
 ASN 676ASP 990
C
 PRO 675MET 983
D
 GLN 677VAL 986
X
 UNK 984UNK 994
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 3GT8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
14
B
728 743Right-handed alpha
Helix 2
15
B
773 780Right-handed alpha
Helix 3
16
B
786 807Right-handed alpha
Helix 4
17
B
853 857Right-handed 310
Helix 5
18
B
858 865Right-handed alpha
Helix 6
19
B
868 885Right-handed alpha
Helix 7
20
B
895 897Right-handed 310
Helix 8
21
B
898 905Right-handed alpha
Helix 9
22
B
916 926Right-handed alpha
Helix 10
23
B
930 934Right-handed 310
Helix 11
24
B
936 949Right-handed alpha
Helix 12
25
B
950 955Right-handed alpha
Helix 13
26
B
967 978Right-handed alpha
Helix 14
1
A
730 744Right-handed alpha
Helix 15
2
A
773 781Right-handed alpha
Helix 16
3
A
786 807Right-handed alpha
Helix 17
4
A
815 817Right-handed 310
Helix 18
5
A
853 857Right-handed 310
Helix 19
6
A
858 865Right-handed alpha
Helix 20
7
A
869 885Right-handed alpha
Helix 21
8
A
898 905Right-handed alpha
Helix 22
9
A
916 927Right-handed alpha
Helix 23
10
A
930 934Right-handed 310
Helix 24
11
A
936 949Right-handed alpha
Helix 25
12
A
950 955Right-handed alpha
Helix 26
13
A
967 978Right-handed alpha
Helix 27
27
C
731 743Right-handed alpha
Helix 28
28
C
773 781Right-handed alpha
Helix 29
29
C
786 807Right-handed alpha
Helix 30
30
C
815 817Right-handed 310
Helix 31
31
C
853 857Right-handed 310
Helix 32
32
C
858 865Right-handed alpha
Helix 33
33
C
868 885Right-handed alpha
Helix 34
34
C
895 897Right-handed 310
Helix 35
35
C
898 905Right-handed alpha
Helix 36
36
C
916 927Right-handed alpha
Helix 37
37
C
930 934Right-handed 310
Helix 38
38
C
936 949Right-handed alpha
Helix 39
39
C
950 955Right-handed alpha
Helix 40
40
C
959 963Right-handed 310
Helix 41
41
C
967 979Right-handed alpha
Helix 42
42
D
684 686Right-handed 310
Helix 43
43
D
731 743Right-handed alpha
Helix 44
44
D
773 780Right-handed alpha
Helix 45
45
D
786 807Right-handed alpha
Helix 46
46
D
815 817Right-handed 310
Helix 47
47
D
853 857Right-handed 310
Helix 48
48
D
858 865Right-handed alpha
Helix 49
49
D
868 885Right-handed alpha
Helix 50
50
D
895 897Right-handed 310
Helix 51
51
D
898 905Right-handed alpha
Helix 52
52
D
916 927Right-handed alpha
Helix 53
53
D
930 934Right-handed 310
Helix 54
54
D
936 949Right-handed alpha
Helix 55
55
D
950 955Right-handed alpha
Helix 56
56
D
967 978Right-handed alpha
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There are 8 sheets in PDB entry 3GT8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
681 682first strand
Strand 2
A
755 757parallel
Strand 3
A
763 767anti-parallel
Strand 4
A
717 723anti-parallel
Strand 5
A
700 707anti-parallel
Strand 6
A
688 693anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
819 823first strand
Strand 2
A
826 829anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
681 682first strand
Strand 2
B
755 757parallel
Strand 3
B
763 767anti-parallel
Strand 4
B
716 723anti-parallel
Strand 5
B
700 707anti-parallel
Strand 6
B
692 696anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
819 823first strand
Strand 2
B
826 829anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
681 682first strand
Strand 2
C
755 758parallel
Strand 3
C
762 767anti-parallel
Strand 4
C
716 723anti-parallel
Strand 5
C
700 707anti-parallel
Strand 6
C
688 696anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
819 823first strand
Strand 2
C
826 829anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
681 682first strand
Strand 2
D
755 758parallel
Strand 3
D
762 766anti-parallel
Strand 4
D
716 722anti-parallel
Strand 5
D
701 707anti-parallel
Strand 6
D
688 696anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
819 823first strand
Strand 2
D
826 829anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il