Analysis of interatomic Contacts of Structural Units in PDB entry:
3GTY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GTY entry

There are 2 chains in PDB entry 3GTY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 MET 1GLY 414
S
 MET 7TRP 155
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3GTY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
22 37Right-handed alpha
Helix 2
2
X
51 56Right-handed alpha
Helix 3
3
X
60 72Right-handed alpha
Helix 4
4
X
115 118Right-handed 310
Helix 5
5
X
125 145Right-handed alpha
Helix 6
6
X
192 197Right-handed alpha
Helix 7
7
X
234 240Right-handed alpha
Helix 8
8
X
247 278Right-handed alpha
Helix 9
9
X
278 283Right-handed alpha
Helix 10
10
X
288 305Right-handed alpha
Helix 11
11
X
307 314Right-handed alpha
Helix 12
12
X
318 347Right-handed alpha
Helix 13
13
X
352 361Right-handed alpha
Helix 14
14
X
370 381Right-handed alpha
Helix 15
15
X
383 402Right-handed alpha
Helix 16
16
S
19 30Right-handed alpha
Helix 17
17
S
37 52Right-handed alpha
Helix 18
18
S
56 69Right-handed alpha
Helix 19
19
S
92 109Right-handed alpha
Helix 20
20
S
114 128Right-handed alpha
Helix 21
21
S
131 145Right-handed alpha
Helix 22
22
S
147 151Right-handed 310
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There are 6 sheets in PDB entry 3GTY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
2 9first strand
Strand 2
X
12 18anti-parallel
Strand 3
X
99 106anti-parallel
Strand 4
X
88 94anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
110 112first strand
Strand 2
X
284 286anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
120 124first strand
Strand 2
X
406 410parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
148 150first strand
Strand 2
X
214 228anti-parallel
Strand 3
X
160 168anti-parallel
Strand 4
X
174 183anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
148 150first strand
Strand 2
X
214 228anti-parallel
Strand 3
X
204 211anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
72 77first strand
Strand 2
S
84 89anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il