Analysis of interatomic Contacts of Structural Units in PDB entry:
3GUE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GUE entry

There are 2 chains in PDB entry 3GUE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8GLU 483
B
 SER 8VAL 482
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3GUE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 21Right-handed alpha
Helix 2
2
A
24 40Right-handed alpha
Helix 3
3
A
47 51Right-handed 310
Helix 4
4
A
59 64Right-handed alpha
Helix 5
5
A
69 74Right-handed alpha
Helix 6
6
A
86 90Right-handed 310
Helix 7
7
A
94 97Right-handed 310
Helix 8
8
A
106 122Right-handed alpha
Helix 9
9
A
135 143Right-handed alpha
Helix 10
10
A
146 151Right-handed alpha
Helix 11
11
A
180 183Right-handed 310
Helix 12
12
A
189 191Right-handed 310
Helix 13
13
A
192 201Right-handed alpha
Helix 14
14
A
201 209Right-handed alpha
Helix 15
15
A
227 237Right-handed alpha
Helix 16
16
A
281 283Right-handed 310
Helix 17
17
A
284 286Right-handed 310
Helix 18
18
A
287 292Right-handed alpha
Helix 19
19
A
309 319Right-handed alpha
Helix 20
20
A
350 356Right-handed 310
Helix 21
21
A
367 371Right-handed 310
Helix 22
22
A
376 385Right-handed alpha
Helix 23
23
A
400 403Right-handed 310
Helix 24
24
A
418 427Right-handed alpha
Helix 25
25
B
8 22Right-handed alpha
Helix 26
26
B
24 41Right-handed alpha
Helix 27
27
B
47 51Right-handed 310
Helix 28
28
B
72 74Right-handed 310
Helix 29
29
B
86 90Right-handed 310
Helix 30
30
B
94 97Right-handed 310
Helix 31
31
B
106 121Right-handed alpha
Helix 32
32
B
135 143Right-handed alpha
Helix 33
33
B
146 151Right-handed alpha
Helix 34
34
B
180 183Right-handed 310
Helix 35
35
B
189 191Right-handed 310
Helix 36
36
B
192 200Right-handed alpha
Helix 37
37
B
201 209Right-handed alpha
Helix 38
38
B
227 238Right-handed alpha
Helix 39
39
B
281 283Right-handed 310
Helix 40
40
B
284 286Right-handed 310
Helix 41
41
B
287 292Right-handed alpha
Helix 42
42
B
309 319Right-handed alpha
Helix 43
43
B
350 357Right-handed 310
Helix 44
44
B
367 371Right-handed 310
Helix 45
45
B
376 385Right-handed alpha
Helix 46
46
B
400 403Right-handed 310
Helix 47
47
B
412 417Right-handed alpha
Helix 48
48
B
418 426Right-handed alpha
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There are 18 sheets in PDB entry 3GUE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
256 261anti-parallel
Strand 3
A
274 279anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
127 131parallel
Strand 3
A
76 82parallel
Strand 4
A
213 218parallel
Strand 5
A
299 308anti-parallel
Strand 6
A
241 247anti-parallel
Strand 7
A
361 365parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
104 105anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
185 186anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
343 348anti-parallel
Strand 3
A
328 333anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 390first strand
Strand 2
A
396 398anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 411first strand
Strand 2
A
436 442parallel
Strand 3
A
452 461parallel
Strand 4
A
474 476parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 411first strand
Strand 2
A
436 442parallel
Strand 3
A
452 461parallel
Strand 4
A
479 482parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 447first strand
Strand 2
A
467 469parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
256 261anti-parallel
Strand 3
B
274 279anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 160first strand
Strand 2
B
127 131parallel
Strand 3
B
76 81parallel
Strand 4
B
213 218parallel
Strand 5
B
299 308anti-parallel
Strand 6
B
241 247anti-parallel
Strand 7
B
361 365parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 101first strand
Strand 2
B
104 105anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 165first strand
Strand 2
B
185 186anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 168first strand
Strand 2
B
343 348anti-parallel
Strand 3
B
328 333anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 390first strand
Strand 2
B
396 398anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
408 411first strand
Strand 2
B
436 442parallel
Strand 3
B
452 460parallel
Strand 4
B
474 476parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
408 411first strand
Strand 2
B
436 442parallel
Strand 3
B
452 460parallel
Strand 4
B
479 481parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
445 447first strand
Strand 2
B
467 469parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il