Analysis of interatomic Contacts of Structural Units in PDB entry:
3GUX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GUX entry

There are 2 chains in PDB entry 3GUX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 37LYS 334
B
 GLU 37LYS 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3GUX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 58Right-handed alpha
Helix 2
2
A
66 83Right-handed alpha
Helix 3
3
A
150 167Right-handed alpha
Helix 4
4
A
199 208Right-handed alpha
Helix 5
5
A
237 242Right-handed alpha
Helix 6
6
A
242 257Right-handed alpha
Helix 7
7
A
272 281Right-handed alpha
Helix 8
8
A
315 332Right-handed alpha
Helix 9
9
B
45 59Right-handed alpha
Helix 10
10
B
66 83Right-handed alpha
Helix 11
11
B
150 167Right-handed alpha
Helix 12
12
B
199 208Right-handed alpha
Helix 13
13
B
235 242Right-handed alpha
Helix 14
14
B
242 257Right-handed alpha
Helix 15
15
B
272 282Right-handed alpha
Helix 16
16
B
315 332Right-handed alpha
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There are 4 sheets in PDB entry 3GUX. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 95first strand
Strand 2
A
101 111anti-parallel
Strand 3
A
172 178anti-parallel
Strand 4
A
118 124parallel
Strand 5
A
218 223parallel
Strand 6
A
285 289parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
262 266parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 95first strand
Strand 2
B
101 111anti-parallel
Strand 3
B
172 178anti-parallel
Strand 4
B
118 124parallel
Strand 5
B
219 223parallel
Strand 6
B
285 289parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 234first strand
Strand 2
B
262 266parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il