Analysis of interatomic Contacts of Structural Units in PDB entry:
3GV1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GV1 entry

There are 3 chains in PDB entry 3GV1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 123GLU 262
B
 SER 124GLU 262
C
 MSE 123GLU 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3GV1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
124 128Right-handed 310
Helix 2
2
A
148 159Right-handed alpha
Helix 3
3
A
179 189Right-handed alpha
Helix 4
4
A
192 204Right-handed alpha
Helix 5
5
A
216 227Right-handed alpha
Helix 6
6
A
250 259Right-handed alpha
Helix 7
7
B
124 128Right-handed 310
Helix 8
8
B
148 159Right-handed alpha
Helix 9
9
B
179 190Right-handed alpha
Helix 10
10
B
192 204Right-handed alpha
Helix 11
11
B
216 227Right-handed alpha
Helix 12
12
B
250 259Right-handed alpha
Helix 13
13
C
124 128Right-handed 310
Helix 14
14
C
148 159Right-handed alpha
Helix 15
15
C
179 189Right-handed alpha
Helix 16
16
C
192 204Right-handed alpha
Helix 17
17
C
216 227Right-handed alpha
Helix 18
18
C
250 259Right-handed alpha
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There are 3 sheets in PDB entry 3GV1. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 133first strand
Strand 2
A
164 170anti-parallel
Strand 3
A
138 144parallel
Strand 4
A
234 236anti-parallel
Strand 5
A
242 244anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 133first strand
Strand 2
B
164 170anti-parallel
Strand 3
B
138 144parallel
Strand 4
B
234 236anti-parallel
Strand 5
B
242 244anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 133first strand
Strand 2
C
164 170anti-parallel
Strand 3
C
138 144parallel
Strand 4
C
234 236anti-parallel
Strand 5
C
242 244anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il