Analysis of interatomic Contacts of Structural Units in PDB entry:
3GVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GVC entry

There are 4 chains in PDB entry 3GVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 27TRP 277
B
 SER 21TRP 277
C
 ASP 26TRP 277
D
 SER 21TRP 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 3GVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 52Right-handed alpha
Helix 2
2
A
62 74Right-handed alpha
Helix 3
3
A
86 102Right-handed alpha
Helix 4
4
A
123 152Right-handed alpha
Helix 5
5
A
162 166Right-handed 310
Helix 6
6
A
172 194Right-handed alpha
Helix 7
7
A
210 218Right-handed alpha
Helix 8
8
A
228 238Right-handed alpha
Helix 9
9
A
242 255Right-handed alpha
Helix 10
10
A
256 259Right-handed 310
Helix 11
11
A
271 275Right-handed 310
Helix 12
12
B
24 28Right-handed 310
Helix 13
13
B
39 52Right-handed alpha
Helix 14
14
B
62 74Right-handed alpha
Helix 15
15
B
86 102Right-handed alpha
Helix 16
16
B
123 153Right-handed alpha
Helix 17
17
B
162 166Right-handed 310
Helix 18
18
B
172 194Right-handed alpha
Helix 19
19
B
210 217Right-handed alpha
Helix 20
20
B
228 238Right-handed alpha
Helix 21
21
B
242 255Right-handed alpha
Helix 22
22
B
256 259Right-handed 310
Helix 23
23
C
39 52Right-handed alpha
Helix 24
24
C
62 74Right-handed alpha
Helix 25
25
C
86 102Right-handed alpha
Helix 26
26
C
123 152Right-handed alpha
Helix 27
27
C
162 166Right-handed 310
Helix 28
28
C
172 194Right-handed alpha
Helix 29
29
C
210 215Right-handed alpha
Helix 30
30
C
228 238Right-handed alpha
Helix 31
31
C
242 255Right-handed alpha
Helix 32
32
C
256 259Right-handed 310
Helix 33
33
C
271 275Right-handed 310
Helix 34
34
D
24 28Right-handed 310
Helix 35
35
D
39 52Right-handed alpha
Helix 36
36
D
62 74Right-handed alpha
Helix 37
37
D
86 102Right-handed alpha
Helix 38
38
D
123 152Right-handed alpha
Helix 39
39
D
162 166Right-handed 310
Helix 40
40
D
172 194Right-handed alpha
Helix 41
41
D
210 218Right-handed alpha
Helix 42
42
D
228 238Right-handed alpha
Helix 43
43
D
243 255Right-handed alpha
Helix 44
44
D
256 259Right-handed 310
Helix 45
45
D
271 275Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 3GVC. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
55 60parallel
Strand 3
A
31 34parallel
Strand 4
A
106 109parallel
Strand 5
A
155 160parallel
Strand 6
A
198 205parallel
Strand 7
A
265 268parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 81first strand
Strand 2
B
55 60parallel
Strand 3
B
31 35parallel
Strand 4
B
106 109parallel
Strand 5
B
155 160parallel
Strand 6
B
198 205parallel
Strand 7
B
265 268parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 81first strand
Strand 2
C
55 60parallel
Strand 3
C
31 35parallel
Strand 4
C
106 109parallel
Strand 5
C
155 160parallel
Strand 6
C
198 205parallel
Strand 7
C
265 268parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
78 81first strand
Strand 2
D
55 60parallel
Strand 3
D
31 35parallel
Strand 4
D
106 109parallel
Strand 5
D
155 160parallel
Strand 6
D
198 205parallel
Strand 7
D
265 268parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il