Analysis of interatomic Contacts of Structural Units in PDB entry:
3GVD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3GVD entry

There are 6 chains in PDB entry 3GVD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 271
B	ASN -1	SER 263
C	ALA 0	ASN 261
D	MET 1	GLY 262
E	MET 1	SER 263
F	MET 1	GLU 5

There are110 helices in PDB entry 3GVD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	2	24	Right-handed alpha
Helix 2	2	A	27	35	Right-handed alpha
Helix 3	3	A	40	54	Right-handed alpha
Helix 4	4	A	59	74	Right-handed alpha
Helix 5	5	A	75	92	Right-handed alpha
Helix 6	6	A	98	105	Right-handed alpha
Helix 7	7	A	105	123	Right-handed alpha
Helix 8	8	A	125	141	Right-handed alpha
Helix 9	9	A	251	255	Right-handed 310
Helix 10	10	A	263	270	Right-handed alpha
Helix 11	11	B	2	24	Right-handed alpha
Helix 12	12	B	24	35	Right-handed alpha
Helix 13	13	B	40	54	Right-handed alpha
Helix 14	14	B	59	74	Right-handed alpha
Helix 15	15	B	75	92	Right-handed alpha
Helix 16	16	B	98	104	Right-handed alpha
Helix 17	17	B	105	123	Right-handed alpha
Helix 18	18	B	125	141	Right-handed alpha
Helix 19	19	B	251	255	Right-handed 310
Helix 20	20	C	2	24	Right-handed alpha
Helix 21	21	C	27	35	Right-handed alpha
Helix 22	22	C	40	54	Right-handed alpha
Helix 23	23	C	59	74	Right-handed alpha
Helix 24	24	C	75	92	Right-handed alpha
Helix 25	25	C	98	104	Right-handed alpha
Helix 26	26	C	105	123	Right-handed alpha
Helix 27	27	C	125	141	Right-handed alpha
Helix 28	28	C	251	256	Right-handed alpha
Helix 29	29	D	2	24	Right-handed alpha
Helix 30	30	D	27	35	Right-handed alpha
Helix 31	31	D	40	53	Right-handed alpha
Helix 32	32	D	59	74	Right-handed alpha
Helix 33	33	D	75	92	Right-handed alpha
Helix 34	34	D	98	104	Right-handed alpha
Helix 35	35	D	105	123	Right-handed alpha
Helix 36	36	D	125	141	Right-handed alpha
Helix 37	37	D	251	256	Right-handed alpha
Helix 38	38	E	2	24	Right-handed alpha
Helix 39	39	E	27	35	Right-handed alpha
Helix 40	40	E	40	54	Right-handed alpha
Helix 41	41	E	59	74	Right-handed alpha
Helix 42	42	E	75	92	Right-handed alpha
Helix 43	43	E	98	105	Right-handed alpha
Helix 44	44	E	105	123	Right-handed alpha
Helix 45	45	E	125	141	Right-handed alpha
Helix 46	46	E	251	255	Right-handed 310
Helix 47	47	F	2	24	Right-handed alpha
Helix 48	48	F	27	35	Right-handed alpha
Helix 49	49	F	40	54	Right-handed alpha
Helix 50	50	F	59	74	Right-handed alpha
Helix 51	51	F	75	92	Right-handed alpha
Helix 52	52	F	98	104	Right-handed alpha
Helix 53	53	F	105	122	Right-handed alpha
Helix 54	54	F	125	141	Right-handed alpha
Helix 55	55	F	251	255	Right-handed 310
Helix 56	56	G	2	24	Right-handed alpha
Helix 57	57	G	24	35	Right-handed alpha
Helix 58	58	G	40	54	Right-handed alpha
Helix 59	59	G	59	74	Right-handed alpha
Helix 60	60	G	75	92	Right-handed alpha
Helix 61	61	G	98	104	Right-handed alpha
Helix 62	62	G	105	124	Right-handed alpha
Helix 63	63	G	125	141	Right-handed alpha
Helix 64	64	G	251	255	Right-handed 310
Helix 65	65	H	2	24	Right-handed alpha
Helix 66	66	H	27	35	Right-handed alpha
Helix 67	67	H	40	54	Right-handed alpha
Helix 68	68	H	59	74	Right-handed alpha
Helix 69	69	H	75	92	Right-handed alpha
Helix 70	70	H	98	105	Right-handed alpha
Helix 71	71	H	105	123	Right-handed alpha
Helix 72	72	H	125	141	Right-handed alpha
Helix 73	73	H	251	256	Right-handed alpha
Helix 74	74	I	2	24	Right-handed alpha
Helix 75	75	I	27	35	Right-handed alpha
Helix 76	76	I	40	54	Right-handed alpha
Helix 77	77	I	59	74	Right-handed alpha
Helix 78	78	I	75	92	Right-handed alpha
Helix 79	79	I	98	104	Right-handed alpha
Helix 80	80	I	105	123	Right-handed alpha
Helix 81	81	I	125	141	Right-handed alpha
Helix 82	82	I	251	255	Right-handed 310
Helix 83	83	I	263	269	Right-handed alpha
Helix 84	84	J	2	24	Right-handed alpha
Helix 85	85	J	24	35	Right-handed alpha
Helix 86	86	J	40	54	Right-handed alpha
Helix 87	87	J	59	74	Right-handed alpha
Helix 88	88	J	75	92	Right-handed alpha
Helix 89	89	J	98	104	Right-handed alpha
Helix 90	90	J	105	122	Right-handed alpha
Helix 91	91	J	125	141	Right-handed alpha
Helix 92	92	J	251	256	Right-handed alpha
Helix 93	93	K	2	24	Right-handed alpha
Helix 94	94	K	27	35	Right-handed alpha
Helix 95	95	K	40	54	Right-handed alpha
Helix 96	96	K	59	74	Right-handed alpha
Helix 97	97	K	75	92	Right-handed alpha
Helix 98	98	K	98	104	Right-handed alpha
Helix 99	99	K	105	123	Right-handed alpha
Helix 100	100	K	125	141	Right-handed alpha
Helix 101	101	K	251	256	Right-handed alpha
Helix 102	102	L	2	24	Right-handed alpha
Helix 103	103	L	24	35	Right-handed alpha
Helix 104	104	L	40	54	Right-handed alpha
Helix 105	105	L	59	74	Right-handed alpha
Helix 106	106	L	75	92	Right-handed alpha
Helix 107	107	L	98	105	Right-handed alpha
Helix 108	108	L	105	122	Right-handed alpha
Helix 109	109	L	125	141	Right-handed alpha
Helix 110	110	L	251	255	Right-handed 310

There are 36 sheets in PDB entry 3GVD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	144	first strand
Strand 2	A	163	164	parallel
Strand 3	A	181	183	parallel
Strand 4	A	207	209	parallel
Strand 5	A	225	226	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	169	170	parallel
Strand 3	A	195	196	parallel
Strand 4	A	213	214	parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	156	first strand
Strand 2	A	175	176	parallel
Strand 3	A	201	202	parallel
Strand 4	A	219	220	parallel
Strand 5	A	235	237	parallel
Strand 6	A	242	245	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	144	first strand
Strand 2	B	163	164	parallel
Strand 3	B	181	183	parallel
Strand 4	B	207	209	parallel
Strand 5	B	225	226	parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	169	170	parallel
Strand 3	B	195	196	parallel
Strand 4	B	213	214	parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	156	first strand
Strand 2	B	175	176	parallel
Strand 3	B	201	202	parallel
Strand 4	B	219	220	parallel
Strand 5	B	235	237	parallel
Strand 6	B	242	245	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	144	first strand
Strand 2	C	163	164	parallel
Strand 3	C	181	183	parallel
Strand 4	C	207	209	parallel
Strand 5	C	225	226	parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	150	first strand
Strand 2	C	169	170	parallel
Strand 3	C	195	196	parallel
Strand 4	C	213	214	parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	156	first strand
Strand 2	C	175	176	parallel
Strand 3	C	201	202	parallel
Strand 4	C	219	220	parallel
Strand 5	C	235	237	parallel
Strand 6	C	242	243	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	144	first strand
Strand 2	D	163	164	parallel
Strand 3	D	181	183	parallel
Strand 4	D	207	209	parallel
Strand 5	D	225	226	parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	150	first strand
Strand 2	D	169	170	parallel
Strand 3	D	195	196	parallel
Strand 4	D	213	214	parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	156	first strand
Strand 2	D	175	176	parallel
Strand 3	D	201	202	parallel
Strand 4	D	219	220	parallel
Strand 5	D	235	237	parallel
Strand 6	D	242	245	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	143	144	first strand
Strand 2	E	163	164	parallel
Strand 3	E	181	183	parallel
Strand 4	E	207	209	parallel
Strand 5	E	225	226	parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	150	first strand
Strand 2	E	169	170	parallel
Strand 3	E	195	196	parallel
Strand 4	E	213	214	parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	156	first strand
Strand 2	E	175	176	parallel
Strand 3	E	201	202	parallel
Strand 4	E	219	220	parallel
Strand 5	E	235	237	parallel
Strand 6	E	242	245	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	143	144	first strand
Strand 2	F	163	164	parallel
Strand 3	F	181	183	parallel
Strand 4	F	207	209	parallel
Strand 5	F	225	226	parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	150	first strand
Strand 2	F	169	170	parallel
Strand 3	F	195	196	parallel
Strand 4	F	213	214	parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	155	156	first strand
Strand 2	F	175	176	parallel
Strand 3	F	201	202	parallel
Strand 4	F	219	220	parallel
Strand 5	F	235	237	parallel
Strand 6	F	242	245	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	142	144	first strand
Strand 2	G	162	164	parallel
Strand 3	G	181	183	parallel
Strand 4	G	207	209	parallel
Strand 5	G	225	226	parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	149	150	first strand
Strand 2	G	169	170	parallel
Strand 3	G	195	196	parallel
Strand 4	G	213	214	parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	155	156	first strand
Strand 2	G	175	176	parallel
Strand 3	G	201	202	parallel
Strand 4	G	219	220	parallel
Strand 5	G	235	237	parallel
Strand 6	G	242	245	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	143	144	first strand
Strand 2	H	163	164	parallel
Strand 3	H	181	183	parallel
Strand 4	H	207	209	parallel
Strand 5	H	225	226	parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	150	first strand
Strand 2	H	169	170	parallel
Strand 3	H	195	196	parallel
Strand 4	H	213	214	parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	154	156	first strand
Strand 2	H	174	176	parallel
Strand 3	H	201	202	parallel
Strand 4	H	219	220	parallel
Strand 5	H	235	237	parallel
Strand 6	H	242	245	anti-parallel

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There are 5 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	143	144	first strand
Strand 2	I	163	164	parallel
Strand 3	I	181	183	parallel
Strand 4	I	207	209	parallel
Strand 5	I	225	226	parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	149	150	first strand
Strand 2	I	169	170	parallel
Strand 3	I	195	196	parallel
Strand 4	I	213	214	parallel

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There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	155	156	first strand
Strand 2	I	175	176	parallel
Strand 3	I	201	202	parallel
Strand 4	I	219	220	parallel
Strand 5	I	235	237	parallel
Strand 6	I	242	245	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	143	144	first strand
Strand 2	J	163	164	parallel
Strand 3	J	181	183	parallel
Strand 4	J	207	209	parallel
Strand 5	J	225	226	parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	149	150	first strand
Strand 2	J	169	170	parallel
Strand 3	J	195	196	parallel
Strand 4	J	213	214	parallel

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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	155	156	first strand
Strand 2	J	175	176	parallel
Strand 3	J	201	202	parallel
Strand 4	J	219	220	parallel
Strand 5	J	235	237	parallel
Strand 6	J	242	245	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	143	144	first strand
Strand 2	K	163	164	parallel
Strand 3	K	181	183	parallel
Strand 4	K	207	209	parallel
Strand 5	K	225	226	parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	149	150	first strand
Strand 2	K	169	170	parallel
Strand 3	K	195	196	parallel
Strand 4	K	213	214	parallel

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There are 6 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	154	157	first strand
Strand 2	K	174	177	parallel
Strand 3	K	201	202	parallel
Strand 4	K	219	220	parallel
Strand 5	K	235	237	parallel
Strand 6	K	242	245	anti-parallel

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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	143	144	first strand
Strand 2	L	163	164	parallel
Strand 3	L	181	183	parallel
Strand 4	L	207	209	parallel
Strand 5	L	225	226	parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	149	150	first strand
Strand 2	L	169	170	parallel
Strand 3	L	195	196	parallel
Strand 4	L	213	214	parallel

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There are 6 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	155	157	first strand
Strand 2	L	175	177	parallel
Strand 3	L	201	202	parallel
Strand 4	L	219	220	parallel
Strand 5	L	235	237	parallel
Strand 6	L	242	245	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3GVD

Analysis of interatomic Contacts of Structural Units in PDB entry:
3GVD