Analysis of interatomic Contacts of Structural Units in PDB entry:
3GVE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GVE entry

There are 2 chains in PDB entry 3GVE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 5LYS 338
B
 PRO 5LYS 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3GVE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 51Right-handed alpha
Helix 2
2
A
66 82Right-handed alpha
Helix 3
3
A
87 96Right-handed alpha
Helix 4
4
A
104 109Right-handed 310
Helix 5
5
A
111 121Right-handed alpha
Helix 6
6
A
171 176Right-handed alpha
Helix 7
7
A
176 181Right-handed alpha
Helix 8
8
A
188 203Right-handed alpha
Helix 9
9
A
228 236Right-handed alpha
Helix 10
10
A
253 257Right-handed 310
Helix 11
11
A
318 338Right-handed alpha
Helix 12
12
B
36 51Right-handed alpha
Helix 13
13
B
66 82Right-handed alpha
Helix 14
14
B
87 96Right-handed alpha
Helix 15
15
B
104 109Right-handed 310
Helix 16
16
B
111 121Right-handed alpha
Helix 17
17
B
171 176Right-handed alpha
Helix 18
18
B
176 181Right-handed alpha
Helix 19
19
B
188 203Right-handed alpha
Helix 20
20
B
228 236Right-handed alpha
Helix 21
21
B
253 257Right-handed 310
Helix 22
22
B
318 338Right-handed alpha
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There are 12 sheets in PDB entry 3GVE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
6 14parallel
Strand 3
A
283 294anti-parallel
Strand 4
A
297 309anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
30 31anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
126 127parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
185 186anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 151first strand
Strand 2
A
157 167anti-parallel
Strand 3
A
207 212parallel
Strand 4
A
241 244parallel
Strand 5
A
272 277parallel
Strand 6
A
250 251anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 151first strand
Strand 2
A
157 167anti-parallel
Strand 3
A
207 212parallel
Strand 4
A
241 244parallel
Strand 5
A
272 277parallel
Strand 6
A
268 269anti-parallel
Strand 7
A
262 263anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 58first strand
Strand 2
B
6 14parallel
Strand 3
B
283 294anti-parallel
Strand 4
B
297 309anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 25first strand
Strand 2
B
30 31anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
126 127parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 132first strand
Strand 2
B
185 186anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 151first strand
Strand 2
B
157 167anti-parallel
Strand 3
B
207 212parallel
Strand 4
B
241 244parallel
Strand 5
B
272 277parallel
Strand 6
B
250 251anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 151first strand
Strand 2
B
157 167anti-parallel
Strand 3
B
207 212parallel
Strand 4
B
241 244parallel
Strand 5
B
272 277parallel
Strand 6
B
268 269anti-parallel
Strand 7
B
262 263anti-parallel
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