Analysis of interatomic Contacts of Structural Units in PDB entry:
3GVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GVI entry

There are 6 chains in PDB entry 3GVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LYS 320
B
 ALA 2LYS 320
C
 ALA 2LYS 320
D
 ALA 2LEU 319
E
 ALA 2LYS 320
F
 ALA 2LYS 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are101 helices in PDB entry 3GVI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
38 55Right-handed alpha
Helix 3
3
A
65 70Right-handed 310
Helix 4
4
A
90 111Right-handed alpha
Helix 5
5
A
122 135Right-handed alpha
Helix 6
6
A
137 139Right-handed 310
Helix 7
7
A
145 162Right-handed alpha
Helix 8
8
A
164 166Right-handed 310
Helix 9
9
A
176 178Right-handed 310
Helix 10
10
A
184 186Right-handed 310
Helix 11
11
A
194 200Right-handed alpha
Helix 12
12
A
204 217Right-handed alpha
Helix 13
13
A
217 227Right-handed alpha
Helix 14
14
A
232 248Right-handed alpha
Helix 15
15
A
263 265Right-handed 310
Helix 16
16
A
291 316Right-handed alpha
Helix 17
17
A
317 320Right-handed 310
Helix 18
18
B
12 25Right-handed alpha
Helix 19
19
B
38 55Right-handed alpha
Helix 20
20
B
65 70Right-handed 310
Helix 21
21
B
90 111Right-handed alpha
Helix 22
22
B
122 135Right-handed alpha
Helix 23
23
B
137 139Right-handed 310
Helix 24
24
B
145 162Right-handed alpha
Helix 25
25
B
164 166Right-handed 310
Helix 26
26
B
176 178Right-handed 310
Helix 27
27
B
184 186Right-handed 310
Helix 28
28
B
194 200Right-handed alpha
Helix 29
29
B
204 217Right-handed alpha
Helix 30
30
B
217 227Right-handed alpha
Helix 31
31
B
232 248Right-handed alpha
Helix 32
32
B
263 265Right-handed 310
Helix 33
33
B
291 316Right-handed alpha
Helix 34
34
B
317 320Right-handed 310
Helix 35
35
C
12 25Right-handed alpha
Helix 36
36
C
38 55Right-handed alpha
Helix 37
37
C
65 70Right-handed 310
Helix 38
38
C
91 111Right-handed alpha
Helix 39
39
C
122 135Right-handed alpha
Helix 40
40
C
137 139Right-handed 310
Helix 41
41
C
145 162Right-handed alpha
Helix 42
42
C
164 166Right-handed 310
Helix 43
43
C
176 178Right-handed 310
Helix 44
44
C
184 186Right-handed 310
Helix 45
45
C
194 201Right-handed alpha
Helix 46
46
C
204 217Right-handed alpha
Helix 47
47
C
217 227Right-handed alpha
Helix 48
48
C
232 248Right-handed alpha
Helix 49
49
C
263 265Right-handed 310
Helix 50
50
C
291 316Right-handed alpha
Helix 51
51
C
317 320Right-handed 310
Helix 52
52
D
12 25Right-handed alpha
Helix 53
53
D
38 55Right-handed alpha
Helix 54
54
D
65 70Right-handed 310
Helix 55
55
D
90 111Right-handed alpha
Helix 56
56
D
122 135Right-handed alpha
Helix 57
57
D
137 139Right-handed 310
Helix 58
58
D
145 162Right-handed alpha
Helix 59
59
D
164 166Right-handed 310
Helix 60
60
D
176 178Right-handed 310
Helix 61
61
D
184 186Right-handed 310
Helix 62
62
D
194 200Right-handed alpha
Helix 63
63
D
204 217Right-handed alpha
Helix 64
64
D
217 227Right-handed alpha
Helix 65
65
D
232 248Right-handed alpha
Helix 66
66
D
263 265Right-handed 310
Helix 67
67
D
291 316Right-handed alpha
Helix 68
68
E
12 25Right-handed alpha
Helix 69
69
E
38 55Right-handed alpha
Helix 70
70
E
65 70Right-handed 310
Helix 71
71
E
90 111Right-handed alpha
Helix 72
72
E
122 135Right-handed alpha
Helix 73
73
E
137 139Right-handed 310
Helix 74
74
E
145 162Right-handed alpha
Helix 75
75
E
164 166Right-handed 310
Helix 76
76
E
176 178Right-handed 310
Helix 77
77
E
184 186Right-handed 310
Helix 78
78
E
194 200Right-handed alpha
Helix 79
79
E
204 217Right-handed alpha
Helix 80
80
E
217 227Right-handed alpha
Helix 81
81
E
232 248Right-handed alpha
Helix 82
82
E
263 265Right-handed 310
Helix 83
83
E
291 316Right-handed alpha
Helix 84
84
E
317 320Right-handed 310
Helix 85
85
F
12 25Right-handed alpha
Helix 86
86
F
38 55Right-handed alpha
Helix 87
87
F
65 70Right-handed 310
Helix 88
88
F
90 111Right-handed alpha
Helix 89
89
F
122 135Right-handed alpha
Helix 90
90
F
137 139Right-handed 310
Helix 91
91
F
145 162Right-handed alpha
Helix 92
92
F
164 166Right-handed 310
Helix 93
93
F
176 178Right-handed 310
Helix 94
94
F
184 186Right-handed 310
Helix 95
95
F
194 201Right-handed alpha
Helix 96
96
F
204 217Right-handed alpha
Helix 97
97
F
217 227Right-handed alpha
Helix 98
98
F
232 249Right-handed alpha
Helix 99
99
F
263 265Right-handed 310
Helix 100
100
F
291 316Right-handed alpha
Helix 101
101
F
317 320Right-handed 310
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There are 22 sheets in PDB entry 3GVI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
29 33parallel
Strand 3
A
5 9parallel
Strand 4
A
74 77parallel
Strand 5
A
115 118parallel
Strand 6
A
141 143parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
188 189anti-parallel
Strand 3
A
192 193anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
180 182anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 261first strand
Strand 2
A
267 278anti-parallel
Strand 3
A
281 285anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
29 33parallel
Strand 3
B
5 9parallel
Strand 4
B
74 77parallel
Strand 5
B
115 118parallel
Strand 6
B
141 144parallel
Strand 7
B
252 261anti-parallel
Strand 8
B
267 278anti-parallel
Strand 9
B
281 285anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 169first strand
Strand 2
B
188 189anti-parallel
Strand 3
B
192 193anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 174first strand
Strand 2
B
180 182anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 63first strand
Strand 2
C
29 33parallel
Strand 3
C
5 9parallel
Strand 4
C
74 77parallel
Strand 5
C
115 118parallel
Strand 6
C
141 144parallel
Strand 7
C
252 261anti-parallel
Strand 8
C
267 278anti-parallel
Strand 9
C
281 285anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
168 169first strand
Strand 2
C
188 189anti-parallel
Strand 3
C
192 193anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 174first strand
Strand 2
C
180 182anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 63first strand
Strand 2
D
29 33parallel
Strand 3
D
5 9parallel
Strand 4
D
74 77parallel
Strand 5
D
115 118parallel
Strand 6
D
141 143parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
168 169first strand
Strand 2
D
188 189anti-parallel
Strand 3
D
192 193anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
172 174first strand
Strand 2
D
180 182anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
252 261first strand
Strand 2
D
267 278anti-parallel
Strand 3
D
281 285anti-parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
60 63first strand
Strand 2
E
29 33parallel
Strand 3
E
5 9parallel
Strand 4
E
74 77parallel
Strand 5
E
115 118parallel
Strand 6
E
141 143parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
168 169first strand
Strand 2
E
188 189anti-parallel
Strand 3
E
192 193anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
172 174first strand
Strand 2
E
180 182anti-parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
252 261first strand
Strand 2
E
267 278anti-parallel
Strand 3
E
281 285anti-parallel
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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
60 63first strand
Strand 2
F
29 33parallel
Strand 3
F
5 9parallel
Strand 4
F
74 77parallel
Strand 5
F
115 118parallel
Strand 6
F
141 143parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
168 169first strand
Strand 2
F
188 189anti-parallel
Strand 3
F
192 193anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
172 174first strand
Strand 2
F
180 182anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
252 261first strand
Strand 2
F
267 278anti-parallel
Strand 3
F
281 285anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il