Analysis of interatomic Contacts of Structural Units in PDB entry:
3GVK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3GVK entry

There are 3 chains in PDB entry 3GVK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 267	THR 910
B	SER 245	THR 910
C	SER 245	THR 910

There are 14 helices in PDB entry 3GVK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	285	287	Right-handed 310
Helix 2	2	A	572	576	Right-handed 310
Helix 3	3	A	832	835	Right-handed 310
Helix 4	4	A	847	851	Right-handed 310
Helix 5	5	B	254	265	Right-handed alpha
Helix 6	6	B	285	287	Right-handed 310
Helix 7	7	B	572	576	Right-handed 310
Helix 8	8	B	832	835	Right-handed 310
Helix 9	9	B	847	851	Right-handed 310
Helix 10	10	C	254	264	Right-handed alpha
Helix 11	11	C	285	287	Right-handed 310
Helix 12	12	C	572	576	Right-handed 310
Helix 13	13	C	832	835	Right-handed 310
Helix 14	14	C	847	851	Right-handed 310

There are 41 sheets in PDB entry 3GVK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	272	first strand
Strand 2	A	289	290	parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	279	first strand
Strand 2	A	293	296	parallel
Strand 3	A	304	307	anti-parallel
Strand 4	A	686	690	parallel
Strand 5	A	667	674	anti-parallel
Strand 6	A	639	645	anti-parallel
Strand 7	A	633	636	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	710	first strand
Strand 2	A	713	720	anti-parallel
Strand 3	A	746	753	anti-parallel
Strand 4	A	314	318	anti-parallel
Strand 5	B	765	766	parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	327	first strand
Strand 2	A	339	347	anti-parallel
Strand 3	A	334	336	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	327	first strand
Strand 2	A	339	347	anti-parallel
Strand 3	A	356	362	anti-parallel
Strand 4	A	373	374	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	388	first strand
Strand 2	A	398	407	anti-parallel
Strand 3	A	392	395	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	388	first strand
Strand 2	A	398	407	anti-parallel
Strand 3	A	413	422	anti-parallel
Strand 4	A	513	516	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	430	first strand
Strand 2	A	500	504	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	476	first strand
Strand 2	A	481	485	anti-parallel
Strand 3	A	441	445	anti-parallel
Strand 4	A	433	435	anti-parallel
Strand 5	A	494	495	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	459	first strand
Strand 2	A	469	472	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	531	first strand
Strand 2	A	537	543	anti-parallel
Strand 3	A	550	556	anti-parallel
Strand 4	A	567	570	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	587	first strand
Strand 2	A	590	597	anti-parallel
Strand 3	A	606	610	anti-parallel
Strand 4	A	618	621	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	765	766	first strand
Strand 2	C	314	318	parallel
Strand 3	C	746	753	anti-parallel
Strand 4	C	713	720	anti-parallel
Strand 5	C	703	710	anti-parallel

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There are 12 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	777	778	first strand
Strand 2	A	784	786	anti-parallel
Strand 3	C	790	792	parallel
Strand 4	B	796	798	parallel
Strand 5	A	801	803	parallel
Strand 6	C	812	817	parallel
Strand 7	B	821	826	parallel
Strand 8	A	837	841	parallel
Strand 9	A	853	857	anti-parallel
Strand 10	A	866	870	anti-parallel
Strand 11	C	873	877	parallel
Strand 12	B	881	883	parallel

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There are 12 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	777	778	first strand
Strand 2	B	784	786	anti-parallel
Strand 3	A	790	792	parallel
Strand 4	C	796	798	parallel
Strand 5	B	801	803	parallel
Strand 6	A	812	817	parallel
Strand 7	C	821	826	parallel
Strand 8	B	837	841	parallel
Strand 9	B	853	857	anti-parallel
Strand 10	B	866	870	anti-parallel
Strand 11	A	873	877	parallel
Strand 12	C	881	883	parallel

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There are 12 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	881	883	first strand
Strand 2	B	873	877	parallel
Strand 3	C	866	870	parallel
Strand 4	C	853	857	anti-parallel
Strand 5	C	837	841	anti-parallel
Strand 6	A	821	826	parallel
Strand 7	B	812	817	parallel
Strand 8	C	801	803	parallel
Strand 9	A	796	798	parallel
Strand 10	B	790	792	parallel
Strand 11	C	784	786	parallel
Strand 12	C	777	778	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	902	903	first strand
Strand 2	C	908	909	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	908	909	first strand
Strand 2	B	902	903	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	272	first strand
Strand 2	B	289	290	parallel

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There are 7 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	279	first strand
Strand 2	B	293	296	parallel
Strand 3	B	304	307	anti-parallel
Strand 4	B	686	690	parallel
Strand 5	B	667	674	anti-parallel
Strand 6	B	639	645	anti-parallel
Strand 7	B	633	636	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	703	710	first strand
Strand 2	B	713	720	anti-parallel
Strand 3	B	746	753	anti-parallel
Strand 4	B	314	318	anti-parallel
Strand 5	C	765	766	parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	327	first strand
Strand 2	B	339	347	anti-parallel
Strand 3	B	334	336	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	327	first strand
Strand 2	B	339	347	anti-parallel
Strand 3	B	356	362	anti-parallel
Strand 4	B	373	374	anti-parallel

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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	388	first strand
Strand 2	B	398	407	anti-parallel
Strand 3	B	392	395	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	388	first strand
Strand 2	B	398	407	anti-parallel
Strand 3	B	413	422	anti-parallel
Strand 4	B	513	516	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	430	first strand
Strand 2	B	500	505	anti-parallel
Strand 3	B	456	460	anti-parallel
Strand 4	B	469	472	anti-parallel

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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	478	first strand
Strand 2	B	481	485	anti-parallel
Strand 3	B	441	445	anti-parallel
Strand 4	B	433	435	anti-parallel
Strand 5	B	494	495	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	531	first strand
Strand 2	B	537	543	anti-parallel
Strand 3	B	550	556	anti-parallel
Strand 4	B	567	570	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	579	587	first strand
Strand 2	B	590	597	anti-parallel
Strand 3	B	606	610	anti-parallel
Strand 4	B	618	621	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	908	909	first strand
Strand 2	C	902	903	parallel

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There are 8 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	253	first strand
Strand 2	C	277	279	parallel
Strand 3	C	293	296	parallel
Strand 4	C	304	307	anti-parallel
Strand 5	C	686	690	parallel
Strand 6	C	667	674	anti-parallel
Strand 7	C	639	645	anti-parallel
Strand 8	C	633	636	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	272	first strand
Strand 2	C	289	290	parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	327	first strand
Strand 2	C	339	347	anti-parallel
Strand 3	C	334	336	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	327	first strand
Strand 2	C	339	347	anti-parallel
Strand 3	C	356	362	anti-parallel
Strand 4	C	373	374	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	388	first strand
Strand 2	C	398	407	anti-parallel
Strand 3	C	392	395	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	388	first strand
Strand 2	C	398	407	anti-parallel
Strand 3	C	413	422	anti-parallel
Strand 4	C	513	516	anti-parallel

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There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	426	430	first strand
Strand 2	C	500	504	anti-parallel

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There are 5 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	475	478	first strand
Strand 2	C	481	485	anti-parallel
Strand 3	C	441	445	anti-parallel
Strand 4	C	433	435	anti-parallel
Strand 5	C	494	495	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	459	first strand
Strand 2	C	469	472	anti-parallel

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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	525	531	first strand
Strand 2	C	537	543	anti-parallel
Strand 3	C	550	556	anti-parallel
Strand 4	C	567	570	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	579	587	first strand
Strand 2	C	590	597	anti-parallel
Strand 3	C	606	610	anti-parallel
Strand 4	C	618	621	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3GVK

Analysis of interatomic Contacts of Structural Units in PDB entry:
3GVK