Analysis of interatomic Contacts of Structural Units in PDB entry:
3GVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GVP entry

There are 4 chains in PDB entry 3GVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ASN 607
B
 SER -2PRO 606
C
 GLN 176ASN 607
D
 GLN 177ASN 607
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 3GVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
190 192Right-handed 310
Helix 2
2
A
193 207Right-handed alpha
Helix 3
3
A
208 219Right-handed alpha
Helix 4
4
A
236 249Right-handed alpha
Helix 5
5
A
264 275Right-handed alpha
Helix 6
6
A
285 298Right-handed alpha
Helix 7
7
A
312 322Right-handed alpha
Helix 8
8
A
322 328Right-handed alpha
Helix 9
9
A
336 344Right-handed alpha
Helix 10
10
A
362 370Right-handed alpha
Helix 11
11
A
370 387Right-handed alpha
Helix 12
12
A
401 414Right-handed alpha
Helix 13
13
A
424 434Right-handed alpha
Helix 14
14
A
440 445Right-handed alpha
Helix 15
15
A
462 469Right-handed alpha
Helix 16
16
A
486 491Right-handed 310
Helix 17
17
A
520 522Right-handed 310
Helix 18
18
A
523 529Right-handed alpha
Helix 19
19
A
532 553Right-handed alpha
Helix 20
20
A
566 578Right-handed alpha
Helix 21
21
A
579 582Right-handed 310
Helix 22
22
A
589 597Right-handed alpha
Helix 23
23
B
190 192Right-handed 310
Helix 24
24
B
193 207Right-handed alpha
Helix 25
25
B
208 219Right-handed alpha
Helix 26
26
B
236 249Right-handed alpha
Helix 27
27
B
264 274Right-handed alpha
Helix 28
28
B
285 298Right-handed alpha
Helix 29
29
B
312 322Right-handed alpha
Helix 30
30
B
322 328Right-handed alpha
Helix 31
31
B
336 346Right-handed alpha
Helix 32
32
B
362 370Right-handed alpha
Helix 33
33
B
370 387Right-handed alpha
Helix 34
34
B
401 414Right-handed alpha
Helix 35
35
B
424 434Right-handed alpha
Helix 36
36
B
440 445Right-handed alpha
Helix 37
37
B
462 469Right-handed alpha
Helix 38
38
B
486 491Right-handed 310
Helix 39
39
B
520 522Right-handed 310
Helix 40
40
B
523 529Right-handed alpha
Helix 41
41
B
532 552Right-handed alpha
Helix 42
42
B
566 578Right-handed alpha
Helix 43
43
B
579 582Right-handed 310
Helix 44
44
B
589 597Right-handed alpha
Helix 45
45
C
190 192Right-handed 310
Helix 46
46
C
193 207Right-handed alpha
Helix 47
47
C
208 218Right-handed alpha
Helix 48
48
C
236 249Right-handed alpha
Helix 49
49
C
264 274Right-handed alpha
Helix 50
50
C
285 298Right-handed alpha
Helix 51
51
C
312 322Right-handed alpha
Helix 52
52
C
322 328Right-handed alpha
Helix 53
53
C
336 349Right-handed alpha
Helix 54
54
C
362 371Right-handed alpha
Helix 55
55
C
371 387Right-handed alpha
Helix 56
56
C
401 414Right-handed alpha
Helix 57
57
C
424 434Right-handed alpha
Helix 58
58
C
440 445Right-handed alpha
Helix 59
59
C
462 469Right-handed alpha
Helix 60
60
C
486 491Right-handed 310
Helix 61
61
C
520 522Right-handed 310
Helix 62
62
C
523 529Right-handed alpha
Helix 63
63
C
532 553Right-handed alpha
Helix 64
64
C
566 578Right-handed alpha
Helix 65
65
C
579 582Right-handed 310
Helix 66
66
C
589 597Right-handed alpha
Helix 67
67
D
190 192Right-handed 310
Helix 68
68
D
193 208Right-handed alpha
Helix 69
69
D
208 219Right-handed alpha
Helix 70
70
D
236 249Right-handed alpha
Helix 71
71
D
264 274Right-handed alpha
Helix 72
72
D
285 298Right-handed alpha
Helix 73
73
D
312 322Right-handed alpha
Helix 74
74
D
322 329Right-handed alpha
Helix 75
75
D
336 350Right-handed alpha
Helix 76
76
D
362 371Right-handed alpha
Helix 77
77
D
371 387Right-handed alpha
Helix 78
78
D
401 414Right-handed alpha
Helix 79
79
D
424 434Right-handed alpha
Helix 80
80
D
440 445Right-handed alpha
Helix 81
81
D
462 469Right-handed alpha
Helix 82
82
D
487 491Right-handed 310
Helix 83
83
D
520 522Right-handed 310
Helix 84
84
D
523 529Right-handed alpha
Helix 85
85
D
532 552Right-handed alpha
Helix 86
86
D
566 578Right-handed alpha
Helix 87
87
D
579 582Right-handed 310
Helix 88
88
D
589 597Right-handed alpha
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There are 8 sheets in PDB entry 3GVP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 279first strand
Strand 2
A
252 257parallel
Strand 3
A
228 233parallel
Strand 4
A
306 309parallel
Strand 5
A
331 334parallel
Strand 6
A
356 358parallel
Strand 7
A
562 564parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 438first strand
Strand 2
A
417 421parallel
Strand 3
A
394 398parallel
Strand 4
A
450 453parallel
Strand 5
A
473 477parallel
Strand 6
A
514 518parallel
Strand 7
A
504 508anti-parallel
Strand 8
A
496 501anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 279first strand
Strand 2
B
252 257parallel
Strand 3
B
228 233parallel
Strand 4
B
306 309parallel
Strand 5
B
331 334parallel
Strand 6
B
356 358parallel
Strand 7
B
562 564parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 438first strand
Strand 2
B
417 421parallel
Strand 3
B
394 398parallel
Strand 4
B
450 453parallel
Strand 5
B
473 477parallel
Strand 6
B
514 518parallel
Strand 7
B
504 508anti-parallel
Strand 8
B
496 501anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
278 279first strand
Strand 2
C
252 257parallel
Strand 3
C
228 233parallel
Strand 4
C
306 309parallel
Strand 5
C
331 334parallel
Strand 6
C
356 358parallel
Strand 7
C
562 564parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
437 438first strand
Strand 2
C
417 421parallel
Strand 3
C
394 398parallel
Strand 4
C
450 453parallel
Strand 5
C
473 477parallel
Strand 6
C
514 518parallel
Strand 7
C
504 508anti-parallel
Strand 8
C
496 501anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
278 279first strand
Strand 2
D
252 257parallel
Strand 3
D
228 233parallel
Strand 4
D
306 309parallel
Strand 5
D
331 334parallel
Strand 6
D
356 358parallel
Strand 7
D
562 564parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
437 438first strand
Strand 2
D
417 421parallel
Strand 3
D
394 398parallel
Strand 4
D
450 453parallel
Strand 5
D
473 477parallel
Strand 6
D
514 518parallel
Strand 7
D
504 508anti-parallel
Strand 8
D
496 501anti-parallel
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