Analysis of interatomic Contacts of Structural Units in PDB entry:
3GVT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GVT entry

There are 2 chains in PDB entry 3GVT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 706LEU 1049
B
 GLY 706LEU 1049
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 3GVT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
708 715Right-handed alpha
Helix 2
2
A
723 728Right-handed 310
Helix 3
3
A
730 736Right-handed alpha
Helix 4
4
A
737 749Right-handed alpha
Helix 5
5
A
752 765Right-handed alpha
Helix 6
6
A
766 772Right-handed alpha
Helix 7
7
A
775 787Right-handed alpha
Helix 8
8
A
788 800Right-handed alpha
Helix 9
9
A
802 808Right-handed alpha
Helix 10
10
A
811 821Right-handed alpha
Helix 11
11
A
824 836Right-handed alpha
Helix 12
12
A
840 847Right-handed alpha
Helix 13
13
A
849 861Right-handed alpha
Helix 14
14
A
862 865Right-handed 310
Helix 15
15
A
866 873Right-handed alpha
Helix 16
16
A
876 882Right-handed alpha
Helix 17
17
A
885 897Right-handed alpha
Helix 18
18
A
898 911Right-handed alpha
Helix 19
19
A
912 919Right-handed alpha
Helix 20
20
A
921 933Right-handed alpha
Helix 21
21
A
934 946Right-handed alpha
Helix 22
22
A
948 954Right-handed alpha
Helix 23
23
A
957 969Right-handed alpha
Helix 24
24
A
970 984Right-handed alpha
Helix 25
25
A
991 998Right-handed alpha
Helix 26
26
A
1000 1012Right-handed alpha
Helix 27
27
A
1013 1025Right-handed alpha
Helix 28
28
A
1026 1028Right-handed 310
Helix 29
29
A
1036 1046Right-handed alpha
Helix 30
30
B
708 715Right-handed alpha
Helix 31
31
B
723 728Right-handed 310
Helix 32
32
B
730 736Right-handed alpha
Helix 33
33
B
737 751Right-handed alpha
Helix 34
34
B
752 765Right-handed alpha
Helix 35
35
B
766 772Right-handed alpha
Helix 36
36
B
775 787Right-handed alpha
Helix 37
37
B
788 800Right-handed alpha
Helix 38
38
B
802 808Right-handed alpha
Helix 39
39
B
811 823Right-handed alpha
Helix 40
40
B
824 836Right-handed alpha
Helix 41
41
B
840 847Right-handed alpha
Helix 42
42
B
849 861Right-handed alpha
Helix 43
43
B
862 865Right-handed 310
Helix 44
44
B
866 872Right-handed alpha
Helix 45
45
B
876 882Right-handed alpha
Helix 46
46
B
885 897Right-handed alpha
Helix 47
47
B
898 911Right-handed alpha
Helix 48
48
B
912 919Right-handed alpha
Helix 49
49
B
921 933Right-handed alpha
Helix 50
50
B
934 946Right-handed alpha
Helix 51
51
B
948 954Right-handed alpha
Helix 52
52
B
957 969Right-handed alpha
Helix 53
53
B
970 984Right-handed alpha
Helix 54
54
B
991 997Right-handed alpha
Helix 55
55
B
1000 1012Right-handed alpha
Helix 56
56
B
1013 1025Right-handed alpha
Helix 57
57
B
1026 1028Right-handed 310
Helix 58
58
B
1036 1046Right-handed alpha
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There are 2 sheets in PDB entry 3GVT. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
985 986first strand
Strand 2
A
989 990anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
985 986first strand
Strand 2
B
989 990anti-parallel
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