Analysis of interatomic Contacts of Structural Units in PDB entry:
3GVX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GVX entry

There are 2 chains in PDB entry 3GVX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1GLU 281
B
 LEU 1HIS 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3GVX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 21Right-handed alpha
Helix 2
2
A
64 68Right-handed 310
Helix 3
3
A
77 98Right-handed alpha
Helix 4
4
A
99 109Right-handed alpha
Helix 5
5
A
131 145Right-handed alpha
Helix 6
6
A
166 174Right-handed alpha
Helix 7
7
A
192 197Right-handed alpha
Helix 8
8
A
210 214Right-handed 310
Helix 9
9
A
215 226Right-handed alpha
Helix 10
10
A
265 280Right-handed alpha
Helix 11
11
B
10 21Right-handed alpha
Helix 12
12
B
64 68Right-handed 310
Helix 13
13
B
78 98Right-handed alpha
Helix 14
14
B
99 109Right-handed alpha
Helix 15
15
B
131 144Right-handed alpha
Helix 16
16
B
166 173Right-handed alpha
Helix 17
17
B
192 197Right-handed alpha
Helix 18
18
B
210 214Right-handed 310
Helix 19
19
B
215 226Right-handed alpha
Helix 20
20
B
266 280Right-handed alpha
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There are 4 sheets in PDB entry 3GVX. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
3 5parallel
Strand 3
A
37 40parallel
Strand 4
A
52 55parallel
Strand 5
A
73 75parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
147 151parallel
Strand 3
A
124 128parallel
Strand 4
A
176 179parallel
Strand 5
A
204 207parallel
Strand 6
A
230 233parallel
Strand 7
A
250 252parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
3 5parallel
Strand 3
B
37 40parallel
Strand 4
B
52 55parallel
Strand 5
B
73 75parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
147 151parallel
Strand 3
B
124 128parallel
Strand 4
B
176 179parallel
Strand 5
B
204 207parallel
Strand 6
B
230 233parallel
Strand 7
B
250 252parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il