Analysis of interatomic Contacts of Structural Units in PDB entry:
3GVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GVZ entry

There are 2 chains in PDB entry 3GVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 26LYS 287
B
 CYS 26LYS 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3GVZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 36Right-handed 310
Helix 2
2
A
112 120Right-handed alpha
Helix 3
3
A
122 129Right-handed alpha
Helix 4
4
A
129 134Right-handed alpha
Helix 5
5
A
179 183Right-handed 310
Helix 6
6
A
190 205Right-handed alpha
Helix 7
7
A
211 220Right-handed alpha
Helix 8
8
A
273 279Right-handed alpha
Helix 9
9
B
33 36Right-handed 310
Helix 10
10
B
112 120Right-handed alpha
Helix 11
11
B
122 129Right-handed alpha
Helix 12
12
B
129 134Right-handed alpha
Helix 13
13
B
179 183Right-handed 310
Helix 14
14
B
190 206Right-handed alpha
Helix 15
15
B
211 220Right-handed alpha
Helix 16
16
B
273 279Right-handed alpha
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There are 4 sheets in PDB entry 3GVZ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 173first strand
Strand 2
A
27 32anti-parallel
Strand 3
A
40 48anti-parallel
Strand 4
A
237 246anti-parallel
Strand 5
A
253 258anti-parallel
Strand 6
A
266 271anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 166first strand
Strand 2
A
149 155anti-parallel
Strand 3
A
140 146anti-parallel
Strand 4
A
90 94anti-parallel
Strand 5
A
80 85anti-parallel
Strand 6
A
67 71anti-parallel
Strand 7
A
55 59anti-parallel
Strand 8
A
283 285anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 173first strand
Strand 2
B
27 32anti-parallel
Strand 3
B
40 48anti-parallel
Strand 4
B
237 246anti-parallel
Strand 5
B
253 258anti-parallel
Strand 6
B
266 271anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 166first strand
Strand 2
B
149 155anti-parallel
Strand 3
B
140 146anti-parallel
Strand 4
B
90 94anti-parallel
Strand 5
B
80 85anti-parallel
Strand 6
B
67 71anti-parallel
Strand 7
B
55 59anti-parallel
Strand 8
B
283 285anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il