Analysis of interatomic Contacts of Structural Units in PDB entry:
3GW6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3GW6 entry

There are 5 chains in PDB entry 3GW6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 800	GLN 1063
B	HIS 800	GLN 1063
E	VAL 801	GLN 1063
C	HIS 800	GLN 1063
D	HIS 800	LEU 1051

There are 38 helices in PDB entry 3GW6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	832	835	Right-handed 310
Helix 2	2	A	923	931	Right-handed alpha
Helix 3	3	A	940	948	Right-handed alpha
Helix 4	4	A	949	951	Right-handed 310
Helix 5	5	A	958	969	Right-handed alpha
Helix 6	6	A	1035	1060	Right-handed alpha
Helix 7	7	B	832	835	Right-handed 310
Helix 8	8	B	847	851	Right-handed 310
Helix 9	9	B	923	931	Right-handed alpha
Helix 10	10	B	940	947	Right-handed alpha
Helix 11	11	B	958	969	Right-handed alpha
Helix 12	12	B	1035	1058	Right-handed alpha
Helix 13	13	B	1058	1063	Right-handed alpha
Helix 14	14	E	832	835	Right-handed 310
Helix 15	15	E	847	851	Right-handed 310
Helix 16	16	E	923	931	Right-handed alpha
Helix 17	17	E	940	948	Right-handed alpha
Helix 18	18	E	949	951	Right-handed 310
Helix 19	19	E	958	969	Right-handed alpha
Helix 20	20	E	1035	1061	Right-handed alpha
Helix 21	21	C	832	835	Right-handed 310
Helix 22	22	C	923	931	Right-handed alpha
Helix 23	23	C	940	946	Right-handed alpha
Helix 24	24	C	958	968	Right-handed alpha
Helix 25	25	C	1035	1063	Right-handed alpha
Helix 26	26	D	832	835	Right-handed 310
Helix 27	27	D	847	851	Right-handed 310
Helix 28	28	D	923	931	Right-handed alpha
Helix 29	29	D	940	948	Right-handed alpha
Helix 30	30	D	958	969	Right-handed alpha
Helix 31	31	D	1035	1062	Right-handed alpha
Helix 32	32	F	832	835	Right-handed 310
Helix 33	33	F	847	851	Right-handed 310
Helix 34	34	F	923	931	Right-handed alpha
Helix 35	35	F	940	948	Right-handed alpha
Helix 36	36	F	949	951	Right-handed 310
Helix 37	37	F	958	968	Right-handed alpha
Helix 38	38	F	1035	1062	Right-handed alpha

There are 27 sheets in PDB entry 3GW6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	801	803	first strand
Strand 2	B	812	817	parallel
Strand 3	F	821	826	parallel
Strand 4	A	837	841	parallel
Strand 5	A	853	857	anti-parallel
Strand 6	A	866	870	anti-parallel
Strand 7	B	873	877	parallel
Strand 8	F	881	883	parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	881	883	first strand
Strand 2	A	873	877	parallel
Strand 3	F	866	870	parallel
Strand 4	F	853	857	anti-parallel
Strand 5	F	837	841	anti-parallel
Strand 6	B	821	826	parallel
Strand 7	A	812	817	parallel
Strand 8	F	801	803	parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	881	883	first strand
Strand 2	F	873	877	parallel
Strand 3	B	866	870	parallel
Strand 4	B	853	857	anti-parallel
Strand 5	B	837	841	anti-parallel
Strand 6	A	821	826	parallel
Strand 7	F	812	817	parallel
Strand 8	B	801	803	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	902	903	first strand
Strand 2	B	908	910	parallel
Strand 3	F	1029	1034	anti-parallel
Strand 4	F	984	989	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	908	909	first strand
Strand 2	F	902	903	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	936	938	first strand
Strand 2	A	954	956	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	984	989	first strand
Strand 2	A	1029	1034	anti-parallel
Strand 3	F	908	910	anti-parallel
Strand 4	B	902	903	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	992	1006	first strand
Strand 2	A	1012	1026	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	920	921	first strand
Strand 2	F	936	938	anti-parallel
Strand 3	F	954	956	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	936	938	first strand
Strand 2	B	954	956	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	984	989	first strand
Strand 2	B	1029	1034	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	992	1006	first strand
Strand 2	B	1012	1026	anti-parallel

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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	802	803	first strand
Strand 2	D	812	817	parallel
Strand 3	C	821	826	parallel
Strand 4	E	837	841	parallel
Strand 5	E	853	857	anti-parallel
Strand 6	E	866	870	anti-parallel
Strand 7	D	873	877	parallel
Strand 8	C	881	883	parallel

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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	801	803	first strand
Strand 2	E	812	817	parallel
Strand 3	D	821	826	parallel
Strand 4	C	837	841	parallel
Strand 5	C	853	857	anti-parallel
Strand 6	C	866	870	anti-parallel
Strand 7	E	873	877	parallel
Strand 8	D	881	883	parallel

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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	881	883	first strand
Strand 2	C	873	877	parallel
Strand 3	D	866	870	parallel
Strand 4	D	853	857	anti-parallel
Strand 5	D	837	841	anti-parallel
Strand 6	E	821	826	parallel
Strand 7	C	812	817	parallel
Strand 8	D	801	803	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	902	903	first strand
Strand 2	D	908	909	parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	902	903	first strand
Strand 2	E	908	910	parallel
Strand 3	D	1029	1034	anti-parallel
Strand 4	D	984	989	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	920	921	first strand
Strand 2	D	936	938	anti-parallel
Strand 3	D	954	956	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	936	938	first strand
Strand 2	E	954	956	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	984	989	first strand
Strand 2	E	1029	1034	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	992	1006	first strand
Strand 2	E	1012	1026	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	908	909	first strand
Strand 2	D	902	903	parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	954	956	first strand
Strand 2	C	936	938	anti-parallel
Strand 3	D	920	921	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	984	989	first strand
Strand 2	C	1029	1034	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	992	1006	first strand
Strand 2	C	1012	1026	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	992	1006	first strand
Strand 2	D	1012	1026	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	992	1006	first strand
Strand 2	F	1012	1026	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3GW6

Analysis of interatomic Contacts of Structural Units in PDB entry:
3GW6