Analysis of interatomic Contacts of Structural Units in PDB entry:
3GWB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GWB entry

There are 2 chains in PDB entry 3GWB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 12PRO 426
B
 LEU 12GLU 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3GWB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 49Right-handed 310
Helix 2
2
A
54 63Right-handed alpha
Helix 3
3
A
72 81Right-handed alpha
Helix 4
4
A
104 121Right-handed alpha
Helix 5
5
A
125 144Right-handed alpha
Helix 6
6
A
146 161Right-handed alpha
Helix 7
7
A
180 192Right-handed alpha
Helix 8
8
A
193 195Right-handed 310
Helix 9
9
A
206 221Right-handed alpha
Helix 10
10
A
265 278Right-handed alpha
Helix 11
11
A
283 290Right-handed alpha
Helix 12
12
A
322 341Right-handed alpha
Helix 13
13
A
343 357Right-handed alpha
Helix 14
14
A
364 378Right-handed alpha
Helix 15
15
A
383 395Right-handed alpha
Helix 16
16
A
396 408Right-handed alpha
Helix 17
17
A
409 412Right-handed 310
Helix 18
18
B
45 49Right-handed 310
Helix 19
19
B
54 63Right-handed alpha
Helix 20
20
B
72 82Right-handed alpha
Helix 21
21
B
104 121Right-handed alpha
Helix 22
22
B
125 144Right-handed alpha
Helix 23
23
B
146 161Right-handed alpha
Helix 24
24
B
180 192Right-handed alpha
Helix 25
25
B
193 195Right-handed 310
Helix 26
26
B
206 221Right-handed alpha
Helix 27
27
B
265 278Right-handed alpha
Helix 28
28
B
283 290Right-handed alpha
Helix 29
29
B
322 341Right-handed alpha
Helix 30
30
B
343 356Right-handed alpha
Helix 31
31
B
364 378Right-handed alpha
Helix 32
32
B
383 395Right-handed alpha
Helix 33
33
B
396 408Right-handed alpha
Helix 34
34
B
409 412Right-handed 310
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There are 6 sheets in PDB entry 3GWB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
24 29anti-parallel
Strand 3
A
197 203parallel
Strand 4
A
35 42anti-parallel
Strand 5
A
95 102anti-parallel
Strand 6
A
85 90anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
70 71anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 244first strand
Strand 2
A
414 419parallel
Strand 3
A
249 257anti-parallel
Strand 4
A
311 319anti-parallel
Strand 5
A
299 303anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 18first strand
Strand 2
B
24 29anti-parallel
Strand 3
B
197 203parallel
Strand 4
B
35 42anti-parallel
Strand 5
B
95 102anti-parallel
Strand 6
B
85 90anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
70 71anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 244first strand
Strand 2
B
414 419parallel
Strand 3
B
249 257anti-parallel
Strand 4
B
311 319anti-parallel
Strand 5
B
299 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il