Analysis of interatomic Contacts of Structural Units in PDB entry:
3GWD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GWD entry

There is 1 chain in PDB entry 3GWD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5ALA 535
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 3GWD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 30Right-handed alpha
Helix 2
2
A
46 51Right-handed alpha
Helix 3
3
A
70 77Right-handed alpha
Helix 4
4
A
85 100Right-handed alpha
Helix 5
5
A
102 104Right-handed 310
Helix 6
6
A
156 160Right-handed 310
Helix 7
7
A
168 170Right-handed 310
Helix 8
8
A
187 201Right-handed alpha
Helix 9
9
A
223 233Right-handed alpha
Helix 10
10
A
233 243Right-handed alpha
Helix 11
11
A
261 276Right-handed alpha
Helix 12
12
A
277 284Right-handed alpha
Helix 13
13
A
292 311Right-handed alpha
Helix 14
14
A
313 321Right-handed alpha
Helix 15
15
A
336 342Right-handed 310
Helix 16
16
A
386 391Right-handed alpha
Helix 17
17
A
396 400Right-handed 310
Helix 18
18
A
401 406Right-handed alpha
Helix 19
19
A
436 458Right-handed alpha
Helix 20
20
A
466 483Right-handed alpha
Helix 21
21
A
484 489Right-handed 310
Helix 22
22
A
491 495Right-handed 310
Helix 23
23
A
511 525Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 3GWD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
35 38parallel
Strand 3
A
7 14parallel
Strand 4
A
133 141parallel
Strand 5
A
123 128anti-parallel
Strand 6
A
112 118anti-parallel
Strand 7
A
393 395parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
35 38parallel
Strand 3
A
7 14parallel
Strand 4
A
133 141parallel
Strand 5
A
424 426parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 166first strand
Strand 2
A
375 378parallel
Strand 3
A
180 184parallel
Strand 4
A
203 208parallel
Strand 5
A
345 349parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
332 333parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 359first strand
Strand 2
A
362 365anti-parallel
Strand 3
A
370 372anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 433first strand
Strand 2
A
507 508parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 465first strand
Strand 2
A
530 533anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il