Analysis of interatomic Contacts of Structural Units in PDB entry:
3GWE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GWE entry

There are 2 chains in PDB entry 3GWE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4PHE 344
B
 PRO 8PHE 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 3GWE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 33Right-handed alpha
Helix 2
2
A
37 46Right-handed alpha
Helix 3
3
A
58 74Right-handed alpha
Helix 4
4
A
77 81Right-handed 310
Helix 5
5
A
97 106Right-handed alpha
Helix 6
6
A
122 137Right-handed alpha
Helix 7
7
A
150 155Right-handed 310
Helix 8
8
A
159 164Right-handed alpha
Helix 9
9
A
194 198Right-handed 310
Helix 10
10
A
213 217Right-handed 310
Helix 11
11
A
235 259Right-handed alpha
Helix 12
12
A
261 265Right-handed 310
Helix 13
13
A
274 286Right-handed alpha
Helix 14
14
A
288 292Right-handed 310
Helix 15
15
A
302 304Right-handed 310
Helix 16
16
A
305 317Right-handed alpha
Helix 17
17
B
26 33Right-handed alpha
Helix 18
18
B
37 46Right-handed alpha
Helix 19
19
B
58 71Right-handed alpha
Helix 20
20
B
77 81Right-handed 310
Helix 21
21
B
97 106Right-handed alpha
Helix 22
22
B
122 137Right-handed alpha
Helix 23
23
B
150 155Right-handed 310
Helix 24
24
B
159 164Right-handed alpha
Helix 25
25
B
194 198Right-handed 310
Helix 26
26
B
235 259Right-handed alpha
Helix 27
27
B
261 265Right-handed 310
Helix 28
28
B
274 286Right-handed alpha
Helix 29
29
B
288 292Right-handed 310
Helix 30
30
B
302 304Right-handed 310
Helix 31
31
B
305 317Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 3GWE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 18first strand
Strand 2
A
169 179anti-parallel
Strand 3
A
142 149anti-parallel
Strand 4
A
83 88parallel
Strand 5
A
113 118parallel
Strand 6
B
113 118anti-parallel
Strand 7
B
83 88parallel
Strand 8
B
142 149parallel
Strand 9
B
169 178anti-parallel
Strand 10
B
9 18anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 25first strand
Strand 2
A
49 52anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 192first strand
Strand 2
A
336 343anti-parallel
Strand 3
A
325 332anti-parallel
Strand 4
A
267 270parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 202first strand
Strand 2
A
232 234anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
226 227anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
49 52anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 192first strand
Strand 2
B
336 343anti-parallel
Strand 3
B
325 332anti-parallel
Strand 4
B
267 270parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 202first strand
Strand 2
B
232 234anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 220first strand
Strand 2
B
226 227anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il