Analysis of interatomic Contacts of Structural Units in PDB entry:
3GWQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GWQ entry

There are 2 chains in PDB entry 3GWQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 9PHE 425
B
 GLY 8PHE 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3GWQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 35Right-handed 310
Helix 2
2
A
37 41Right-handed 310
Helix 3
3
A
52 70Right-handed alpha
Helix 4
4
A
82 92Right-handed alpha
Helix 5
5
A
101 111Right-handed alpha
Helix 6
6
A
124 135Right-handed alpha
Helix 7
7
A
148 162Right-handed alpha
Helix 8
8
A
183 196Right-handed alpha
Helix 9
9
A
209 213Right-handed 310
Helix 10
10
A
215 237Right-handed alpha
Helix 11
11
A
253 261Right-handed alpha
Helix 12
12
A
261 267Right-handed alpha
Helix 13
13
A
284 295Right-handed alpha
Helix 14
14
A
337 341Right-handed 310
Helix 15
15
A
360 364Right-handed 310
Helix 16
16
A
397 405Right-handed 310
Helix 17
17
B
27 35Right-handed 310
Helix 18
18
B
52 65Right-handed alpha
Helix 19
19
B
82 92Right-handed alpha
Helix 20
20
B
101 111Right-handed alpha
Helix 21
21
B
124 133Right-handed alpha
Helix 22
22
B
148 162Right-handed alpha
Helix 23
23
B
183 196Right-handed alpha
Helix 24
24
B
209 213Right-handed 310
Helix 25
25
B
215 236Right-handed alpha
Helix 26
26
B
253 266Right-handed alpha
Helix 27
27
B
337 341Right-handed 310
Helix 28
28
B
360 364Right-handed 310
Helix 29
29
B
397 402Right-handed alpha
Helix 30
30
B
403 405Right-handed 310
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There are 6 sheets in PDB entry 3GWQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 358first strand
Strand 2
A
344 349anti-parallel
Strand 3
A
390 394anti-parallel
Strand 4
A
312 323anti-parallel
Strand 5
A
326 329anti-parallel
Strand 6
A
375 378anti-parallel
Strand 7
A
366 370anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 358first strand
Strand 2
A
344 349anti-parallel
Strand 3
A
390 394anti-parallel
Strand 4
A
312 323anti-parallel
Strand 5
A
47 51anti-parallel
Strand 6
A
407 411parallel
Strand 7
A
417 422anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
270 274parallel
Strand 3
A
244 248parallel
Strand 4
A
201 207parallel
Strand 5
A
166 171parallel
Strand 6
A
141 146parallel
Strand 7
A
115 118parallel
Strand 8
A
97 99parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 358first strand
Strand 2
B
344 349anti-parallel
Strand 3
B
390 394anti-parallel
Strand 4
B
312 323anti-parallel
Strand 5
B
326 329anti-parallel
Strand 6
B
375 378anti-parallel
Strand 7
B
366 370anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 358first strand
Strand 2
B
344 349anti-parallel
Strand 3
B
390 394anti-parallel
Strand 4
B
312 323anti-parallel
Strand 5
B
47 51anti-parallel
Strand 6
B
407 411parallel
Strand 7
B
417 422anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 73first strand
Strand 2
B
270 274parallel
Strand 3
B
244 248parallel
Strand 4
B
201 207parallel
Strand 5
B
166 171parallel
Strand 6
B
141 146parallel
Strand 7
B
115 121parallel
Strand 8
B
97 99parallel
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