Analysis of interatomic Contacts of Structural Units in PDB entry:
3GXI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GXI entry

There are 4 chains in PDB entry 3GXI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLN 497
B
 ALA 1GLN 497
C
 ALA 1GLN 497
D
 ALA 1GLN 497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 3GXI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
86 95Right-handed alpha
Helix 2
2
A
97 110Right-handed alpha
Helix 3
3
A
150 155Right-handed alpha
Helix 4
4
A
156 168Right-handed alpha
Helix 5
5
A
182 186Right-handed 310
Helix 6
6
A
203 223Right-handed alpha
Helix 7
7
A
235 241Right-handed 310
Helix 8
8
A
252 263Right-handed alpha
Helix 9
9
A
263 270Right-handed alpha
Helix 10
10
A
286 288Right-handed 310
Helix 11
11
A
289 297Right-handed alpha
Helix 12
12
A
298 303Right-handed alpha
Helix 13
13
A
314 318Right-handed 310
Helix 14
14
A
319 331Right-handed alpha
Helix 15
15
A
356 373Right-handed alpha
Helix 16
16
A
414 425Right-handed alpha
Helix 17
17
B
86 95Right-handed alpha
Helix 18
18
B
97 110Right-handed alpha
Helix 19
19
B
150 155Right-handed alpha
Helix 20
20
B
156 168Right-handed alpha
Helix 21
21
B
182 186Right-handed 310
Helix 22
22
B
203 223Right-handed alpha
Helix 23
23
B
235 241Right-handed 310
Helix 24
24
B
252 263Right-handed alpha
Helix 25
25
B
263 270Right-handed alpha
Helix 26
26
B
286 288Right-handed 310
Helix 27
27
B
289 297Right-handed alpha
Helix 28
28
B
298 303Right-handed alpha
Helix 29
29
B
323 331Right-handed alpha
Helix 30
30
B
356 373Right-handed alpha
Helix 31
31
B
406 409Right-handed 310
Helix 32
32
B
414 425Right-handed alpha
Helix 33
33
C
86 95Right-handed alpha
Helix 34
34
C
97 110Right-handed alpha
Helix 35
35
C
150 155Right-handed alpha
Helix 36
36
C
156 168Right-handed alpha
Helix 37
37
C
182 186Right-handed 310
Helix 38
38
C
203 223Right-handed alpha
Helix 39
39
C
235 241Right-handed 310
Helix 40
40
C
252 263Right-handed alpha
Helix 41
41
C
263 271Right-handed alpha
Helix 42
42
C
286 288Right-handed 310
Helix 43
43
C
289 297Right-handed alpha
Helix 44
44
C
298 303Right-handed alpha
Helix 45
45
C
314 318Right-handed 310
Helix 46
46
C
319 331Right-handed alpha
Helix 47
47
C
356 373Right-handed alpha
Helix 48
48
C
414 425Right-handed alpha
Helix 49
49
D
86 95Right-handed alpha
Helix 50
50
D
97 110Right-handed alpha
Helix 51
51
D
150 155Right-handed alpha
Helix 52
52
D
156 168Right-handed alpha
Helix 53
53
D
182 186Right-handed 310
Helix 54
54
D
203 223Right-handed alpha
Helix 55
55
D
235 241Right-handed 310
Helix 56
56
D
252 263Right-handed alpha
Helix 57
57
D
263 270Right-handed alpha
Helix 58
58
D
286 288Right-handed 310
Helix 59
59
D
289 297Right-handed alpha
Helix 60
60
D
298 303Right-handed alpha
Helix 61
61
D
323 331Right-handed alpha
Helix 62
62
D
356 373Right-handed alpha
Helix 63
63
D
406 409Right-handed 310
Helix 64
64
D
414 425Right-handed alpha
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There are 12 sheets in PDB entry 3GXI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
15 18anti-parallel
Strand 3
A
410 413anti-parallel
Strand 4
A
402 405anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 55first strand
Strand 2
A
36 43anti-parallel
Strand 3
A
488 494anti-parallel
Strand 4
A
456 462anti-parallel
Strand 5
A
445 450anti-parallel
Strand 6
A
432 438anti-parallel
Strand 7
A
65 77anti-parallel
Strand 8
A
468 474parallel
Strand 9
A
478 484anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 84first strand
Strand 2
A
118 123parallel
Strand 3
A
173 178parallel
Strand 4
A
229 231parallel
Strand 5
A
277 284parallel
Strand 6
A
307 311parallel
Strand 7
A
335 341parallel
Strand 8
A
375 382parallel
Strand 9
A
80 84parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
15 18anti-parallel
Strand 3
B
410 413anti-parallel
Strand 4
B
402 405anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 55first strand
Strand 2
B
36 43anti-parallel
Strand 3
B
488 494anti-parallel
Strand 4
B
456 462anti-parallel
Strand 5
B
444 450anti-parallel
Strand 6
B
432 438anti-parallel
Strand 7
B
65 77anti-parallel
Strand 8
B
468 474parallel
Strand 9
B
478 484anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 84first strand
Strand 2
B
118 123parallel
Strand 3
B
173 178parallel
Strand 4
B
229 231parallel
Strand 5
B
277 284parallel
Strand 6
B
307 313parallel
Strand 7
B
335 342parallel
Strand 8
B
375 382parallel
Strand 9
B
80 84parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 7first strand
Strand 2
C
15 18anti-parallel
Strand 3
C
410 413anti-parallel
Strand 4
C
402 405anti-parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 55first strand
Strand 2
C
36 43anti-parallel
Strand 3
C
488 494anti-parallel
Strand 4
C
456 462anti-parallel
Strand 5
C
445 450anti-parallel
Strand 6
C
432 438anti-parallel
Strand 7
C
65 77anti-parallel
Strand 8
C
468 474parallel
Strand 9
C
478 484anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 84first strand
Strand 2
C
118 123parallel
Strand 3
C
173 178parallel
Strand 4
C
229 231parallel
Strand 5
C
277 284parallel
Strand 6
C
307 311parallel
Strand 7
C
335 340parallel
Strand 8
C
375 382parallel
Strand 9
C
80 84parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 7first strand
Strand 2
D
15 18anti-parallel
Strand 3
D
410 413anti-parallel
Strand 4
D
402 405anti-parallel
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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 55first strand
Strand 2
D
36 43anti-parallel
Strand 3
D
488 494anti-parallel
Strand 4
D
456 462anti-parallel
Strand 5
D
444 450anti-parallel
Strand 6
D
432 438anti-parallel
Strand 7
D
65 77anti-parallel
Strand 8
D
468 474parallel
Strand 9
D
478 484anti-parallel
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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
80 84first strand
Strand 2
D
118 123parallel
Strand 3
D
173 178parallel
Strand 4
D
229 231parallel
Strand 5
D
277 284parallel
Strand 6
D
307 313parallel
Strand 7
D
335 342parallel
Strand 8
D
375 382parallel
Strand 9
D
80 84parallel
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