Analysis of interatomic Contacts of Structural Units in PDB entry:
3GXO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GXO entry

There are 4 chains in PDB entry 3GXO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 11ALA 349
D
 GLY 11ALA 349
C
 GLY 11ALA 349
B
 GLY 11ALA 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 3GXO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 42Right-handed alpha
Helix 2
2
A
44 48Right-handed 310
Helix 3
3
A
54 62Right-handed alpha
Helix 4
4
A
64 78Right-handed alpha
Helix 5
5
A
93 98Right-handed alpha
Helix 6
6
A
105 116Right-handed alpha
Helix 7
7
A
116 125Right-handed alpha
Helix 8
8
A
125 133Right-handed alpha
Helix 9
9
A
136 142Right-handed alpha
Helix 10
10
A
144 152Right-handed alpha
Helix 11
11
A
152 176Right-handed alpha
Helix 12
12
A
194 204Right-handed alpha
Helix 13
13
A
214 228Right-handed alpha
Helix 14
14
A
230 232Right-handed 310
Helix 15
15
A
257 261Right-handed 310
Helix 16
16
A
262 277Right-handed alpha
Helix 17
17
A
295 310Right-handed alpha
Helix 18
18
A
315 325Right-handed alpha
Helix 19
19
D
11 42Right-handed alpha
Helix 20
20
D
43 47Right-handed 310
Helix 21
21
D
54 62Right-handed alpha
Helix 22
22
D
64 78Right-handed alpha
Helix 23
23
D
93 98Right-handed alpha
Helix 24
24
D
105 116Right-handed alpha
Helix 25
25
D
116 125Right-handed alpha
Helix 26
26
D
125 133Right-handed alpha
Helix 27
27
D
136 142Right-handed alpha
Helix 28
28
D
144 152Right-handed alpha
Helix 29
29
D
152 176Right-handed alpha
Helix 30
30
D
194 204Right-handed alpha
Helix 31
31
D
214 228Right-handed alpha
Helix 32
32
D
257 261Right-handed 310
Helix 33
33
D
262 277Right-handed alpha
Helix 34
34
D
295 310Right-handed alpha
Helix 35
35
D
315 325Right-handed alpha
Helix 36
36
C
13 41Right-handed alpha
Helix 37
37
C
43 48Right-handed 310
Helix 38
38
C
54 62Right-handed alpha
Helix 39
39
C
64 78Right-handed alpha
Helix 40
40
C
93 98Right-handed alpha
Helix 41
41
C
105 116Right-handed alpha
Helix 42
42
C
116 125Right-handed alpha
Helix 43
43
C
125 133Right-handed alpha
Helix 44
44
C
135 142Right-handed alpha
Helix 45
45
C
144 152Right-handed alpha
Helix 46
46
C
152 176Right-handed alpha
Helix 47
47
C
194 204Right-handed alpha
Helix 48
48
C
214 227Right-handed alpha
Helix 49
49
C
257 261Right-handed 310
Helix 50
50
C
262 277Right-handed alpha
Helix 51
51
C
295 310Right-handed alpha
Helix 52
52
C
315 325Right-handed alpha
Helix 53
53
B
13 42Right-handed alpha
Helix 54
54
B
42 47Right-handed alpha
Helix 55
55
B
54 62Right-handed alpha
Helix 56
56
B
64 78Right-handed alpha
Helix 57
57
B
93 98Right-handed alpha
Helix 58
58
B
105 116Right-handed alpha
Helix 59
59
B
116 125Right-handed alpha
Helix 60
60
B
125 133Right-handed alpha
Helix 61
61
B
136 142Right-handed alpha
Helix 62
62
B
144 152Right-handed alpha
Helix 63
63
B
152 178Right-handed alpha
Helix 64
64
B
194 204Right-handed alpha
Helix 65
65
B
214 227Right-handed alpha
Helix 66
66
B
257 261Right-handed 310
Helix 67
67
B
262 277Right-handed alpha
Helix 68
68
B
295 310Right-handed alpha
Helix 69
69
B
316 324Right-handed alpha
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There are 9 sheets in PDB entry 3GXO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
89 91anti-parallel
Strand 3
A
82 83anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 238first strand
Strand 2
A
208 213parallel
Strand 3
A
185 189parallel
Strand 4
A
251 255parallel
Strand 5
A
282 288parallel
Strand 6
A
341 348anti-parallel
Strand 7
A
328 335anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 53first strand
Strand 2
D
89 91anti-parallel
Strand 3
D
82 83anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
234 238first strand
Strand 2
D
208 213parallel
Strand 3
D
185 189parallel
Strand 4
D
251 255parallel
Strand 5
D
282 288parallel
Strand 6
D
341 348anti-parallel
Strand 7
D
328 335anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 53first strand
Strand 2
C
89 91anti-parallel
Strand 3
C
82 83anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
234 238first strand
Strand 2
C
208 213parallel
Strand 3
C
185 189parallel
Strand 4
C
251 255parallel
Strand 5
C
282 288parallel
Strand 6
C
341 348anti-parallel
Strand 7
C
328 335anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
89 91anti-parallel
Strand 3
B
82 83anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 238first strand
Strand 2
B
208 213parallel
Strand 3
B
185 189parallel
Strand 4
B
251 255parallel
Strand 5
B
282 290parallel
Strand 6
B
314 315parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 238first strand
Strand 2
B
208 213parallel
Strand 3
B
185 189parallel
Strand 4
B
251 255parallel
Strand 5
B
282 290parallel
Strand 6
B
341 348anti-parallel
Strand 7
B
328 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il