Analysis of interatomic Contacts of Structural Units in PDB entry:
3GY1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GY1 entry

There are 2 chains in PDB entry 3GY1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2HIS 404
B
 SER 2HIS 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3GY1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 56Right-handed alpha
Helix 2
2
A
56 62Right-handed alpha
Helix 3
3
A
68 80Right-handed alpha
Helix 4
4
A
85 108Right-handed alpha
Helix 5
5
A
110 115Right-handed alpha
Helix 6
6
A
133 147Right-handed alpha
Helix 7
7
A
179 199Right-handed alpha
Helix 8
8
A
213 225Right-handed alpha
Helix 9
9
A
226 228Right-handed 310
Helix 10
10
A
240 242Right-handed 310
Helix 11
11
A
243 249Right-handed alpha
Helix 12
12
A
263 266Right-handed 310
Helix 13
13
A
267 273Right-handed alpha
Helix 14
14
A
282 287Right-handed 310
Helix 15
15
A
288 302Right-handed alpha
Helix 16
16
A
315 329Right-handed alpha
Helix 17
17
A
341 347Right-handed alpha
Helix 18
18
A
372 377Right-handed alpha
Helix 19
19
A
384 386Right-handed 310
Helix 20
20
B
45 56Right-handed alpha
Helix 21
21
B
56 62Right-handed alpha
Helix 22
22
B
68 80Right-handed alpha
Helix 23
23
B
85 108Right-handed alpha
Helix 24
24
B
110 115Right-handed alpha
Helix 25
25
B
133 147Right-handed alpha
Helix 26
26
B
179 199Right-handed alpha
Helix 27
27
B
213 225Right-handed alpha
Helix 28
28
B
226 228Right-handed 310
Helix 29
29
B
237 242Right-handed 310
Helix 30
30
B
243 249Right-handed alpha
Helix 31
31
B
263 266Right-handed 310
Helix 32
32
B
267 273Right-handed alpha
Helix 33
33
B
282 287Right-handed 310
Helix 34
34
B
288 302Right-handed alpha
Helix 35
35
B
315 329Right-handed alpha
Helix 36
36
B
341 347Right-handed alpha
Helix 37
37
B
372 377Right-handed alpha
Helix 38
38
B
384 386Right-handed 310
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There are 10 sheets in PDB entry 3GY1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 16first strand
Strand 2
A
23 30anti-parallel
Strand 3
A
35 39anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
278 279parallel
Strand 3
A
255 257parallel
Strand 4
A
231 233parallel
Strand 5
A
203 207parallel
Strand 6
A
151 156parallel
Strand 7
A
123 131parallel
Strand 8
A
335 336parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
278 279parallel
Strand 3
A
255 257parallel
Strand 4
A
231 233parallel
Strand 5
A
203 207parallel
Strand 6
A
151 156parallel
Strand 7
A
123 131parallel
Strand 8
A
358 359anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
388 392parallel
Strand 3
A
398 403anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 349first strand
Strand 2
A
370 371anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 16first strand
Strand 2
B
23 30anti-parallel
Strand 3
B
35 39anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 306first strand
Strand 2
B
278 279parallel
Strand 3
B
255 257parallel
Strand 4
B
231 233parallel
Strand 5
B
203 207parallel
Strand 6
B
151 156parallel
Strand 7
B
123 131parallel
Strand 8
B
335 336parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
305 306first strand
Strand 2
B
278 279parallel
Strand 3
B
255 257parallel
Strand 4
B
231 233parallel
Strand 5
B
203 207parallel
Strand 6
B
151 156parallel
Strand 7
B
123 131parallel
Strand 8
B
358 359anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 177first strand
Strand 2
B
388 392parallel
Strand 3
B
398 403anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 349first strand
Strand 2
B
370 371anti-parallel
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