Analysis of interatomic Contacts of Structural Units in PDB entry:
3GYC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GYC entry

There are 2 chains in PDB entry 3GYC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 39LEU 419
B
 GLU 39LEU 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3GYC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 55Right-handed alpha
Helix 2
2
A
64 75Right-handed alpha
Helix 3
3
A
85 92Right-handed alpha
Helix 4
4
A
120 132Right-handed alpha
Helix 5
5
A
148 153Right-handed 310
Helix 6
6
A
155 173Right-handed alpha
Helix 7
7
A
174 177Right-handed 310
Helix 8
8
A
194 199Right-handed alpha
Helix 9
9
A
211 227Right-handed alpha
Helix 10
10
A
244 249Right-handed alpha
Helix 11
11
A
262 264Right-handed 310
Helix 12
12
A
265 276Right-handed alpha
Helix 13
13
A
284 300Right-handed alpha
Helix 14
14
A
301 324Right-handed alpha
Helix 15
15
A
346 364Right-handed alpha
Helix 16
16
A
379 384Right-handed alpha
Helix 17
17
A
385 398Right-handed alpha
Helix 18
18
A
402 407Right-handed alpha
Helix 19
19
A
409 417Right-handed alpha
Helix 20
20
B
50 55Right-handed alpha
Helix 21
21
B
64 75Right-handed alpha
Helix 22
22
B
85 92Right-handed alpha
Helix 23
23
B
120 132Right-handed alpha
Helix 24
24
B
148 153Right-handed 310
Helix 25
25
B
155 173Right-handed alpha
Helix 26
26
B
175 177Right-handed 310
Helix 27
27
B
194 199Right-handed alpha
Helix 28
28
B
211 227Right-handed alpha
Helix 29
29
B
244 249Right-handed alpha
Helix 30
30
B
265 276Right-handed alpha
Helix 31
31
B
284 300Right-handed alpha
Helix 32
32
B
301 323Right-handed alpha
Helix 33
33
B
346 362Right-handed alpha
Helix 34
34
B
379 384Right-handed alpha
Helix 35
35
B
385 398Right-handed alpha
Helix 36
36
B
402 407Right-handed alpha
Helix 37
37
B
409 417Right-handed alpha
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There are 5 sheets in PDB entry 3GYC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
179 183parallel
Strand 3
A
135 139parallel
Strand 4
A
79 83parallel
Strand 5
A
43 49parallel
Strand 6
A
366 369parallel
Strand 7
A
327 329parallel
Strand 8
A
257 258parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
114 116anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 235first strand
Strand 2
B
179 183parallel
Strand 3
B
135 139parallel
Strand 4
B
79 83parallel
Strand 5
B
43 49parallel
Strand 6
B
366 369parallel
Strand 7
B
327 329parallel
Strand 8
B
257 258parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
114 117anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 262first strand
Strand 2
B
332 333parallel
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