Analysis of interatomic Contacts of Structural Units in PDB entry:
3GYK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GYK entry

There are 4 chains in PDB entry 3GYK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1ALA 172
B
 ALA 0ALA 172
C
 ALA 0ALA 172
D
 ALA 0ALA 172
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3GYK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 7Right-handed alpha
Helix 2
2
A
31 48Right-handed alpha
Helix 3
3
A
62 75Right-handed alpha
Helix 4
4
A
76 79Right-handed 310
Helix 5
5
A
80 90Right-handed alpha
Helix 6
6
A
96 107Right-handed alpha
Helix 7
7
A
110 118Right-handed alpha
Helix 8
8
A
120 138Right-handed alpha
Helix 9
9
A
157 172Right-handed alpha
Helix 10
10
B
0 7Right-handed alpha
Helix 11
11
B
31 48Right-handed alpha
Helix 12
12
B
62 76Right-handed alpha
Helix 13
13
B
77 79Right-handed 310
Helix 14
14
B
80 90Right-handed alpha
Helix 15
15
B
96 107Right-handed alpha
Helix 16
16
B
110 118Right-handed alpha
Helix 17
17
B
120 138Right-handed alpha
Helix 18
18
B
157 172Right-handed alpha
Helix 19
19
C
1 7Right-handed alpha
Helix 20
20
C
31 48Right-handed alpha
Helix 21
21
C
62 76Right-handed alpha
Helix 22
22
C
77 79Right-handed 310
Helix 23
23
C
80 90Right-handed alpha
Helix 24
24
C
96 107Right-handed alpha
Helix 25
25
C
110 118Right-handed alpha
Helix 26
26
C
120 138Right-handed alpha
Helix 27
27
C
157 171Right-handed alpha
Helix 28
28
D
1 7Right-handed alpha
Helix 29
29
D
31 48Right-handed alpha
Helix 30
30
D
62 76Right-handed alpha
Helix 31
31
D
77 79Right-handed 310
Helix 32
32
D
80 90Right-handed alpha
Helix 33
33
D
96 107Right-handed alpha
Helix 34
34
D
110 118Right-handed alpha
Helix 35
35
D
120 138Right-handed alpha
Helix 36
36
D
157 171Right-handed alpha
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There are 4 sheets in PDB entry 3GYK. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
51 57anti-parallel
Strand 3
A
21 27parallel
Strand 4
A
144 147anti-parallel
Strand 5
A
150 152anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
51 57anti-parallel
Strand 3
B
21 27parallel
Strand 4
B
144 147anti-parallel
Strand 5
B
150 152anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 15first strand
Strand 2
C
51 57anti-parallel
Strand 3
C
21 27parallel
Strand 4
C
144 147anti-parallel
Strand 5
C
150 153anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 15first strand
Strand 2
D
51 57anti-parallel
Strand 3
D
21 27parallel
Strand 4
D
144 147anti-parallel
Strand 5
D
150 153anti-parallel
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