Analysis of interatomic Contacts of Structural Units in PDB entry:
3GYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GYP entry

There is 1 chain in PDB entry 3GYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 7GLN 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 5 helices in PDB entry 3GYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 11Right-handed 310
Helix 2
2
A
59 63Right-handed alpha
Helix 3
3
A
103 113Right-handed alpha
Helix 4
4
A
123 138Right-handed alpha
Helix 5
5
A
231 243Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3GYP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 57first strand
Strand 2
A
43 49anti-parallel
Strand 3
A
28 36anti-parallel
Strand 4
A
13 24anti-parallel
Strand 5
A
95 102anti-parallel
Strand 6
A
78 85anti-parallel
Strand 7
A
64 71anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 167first strand
Strand 2
A
170 176anti-parallel
Strand 3
A
180 184anti-parallel
Strand 4
A
190 193anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 204first strand
Strand 2
A
209 216anti-parallel
Strand 3
A
221 228anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il