Analysis of interatomic Contacts of Structural Units in PDB entry:
3GYQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GYQ entry

There are 2 chains in PDB entry 3GYQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 8ASN 268
B
ALA 8ASN 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3GYQ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
15 17Right-handed 310
Helix 2
2
A
18 23Right-handed alpha
Helix 3
3
A
36 45Right-handed alpha
Helix 4
4
A
66 71Right-handed alpha
Helix 5
5
A
80 85Right-handed alpha
Helix 6
6
A
107 114Right-handed alpha
Helix 7
7
A
126 140Right-handed alpha
Helix 8
8
A
157 164Right-handed alpha
Helix 9
9
A
165 170Right-handed 310
Helix 10
10
A
177 187Right-handed alpha
Helix 11
11
A
204 209Right-handed 310
Helix 12
12
A
225 229Right-handed 310
Helix 13
13
A
248 259Right-handed alpha
Helix 14
14
A
260 265Right-handed alpha
Helix 15
15
B
15 17Right-handed 310
Helix 16
16
B
18 23Right-handed alpha
Helix 17
17
B
36 46Right-handed alpha
Helix 18
18
B
64 72Right-handed alpha
Helix 19
19
B
80 87Right-handed alpha
Helix 20
20
B
107 113Right-handed alpha
Helix 21
21
B
126 140Right-handed alpha
Helix 22
22
B
157 164Right-handed alpha
Helix 23
23
B
177 188Right-handed alpha
Helix 24
24
B
204 209Right-handed 310
Helix 25
25
B
225 231Right-handed 310
Helix 26
26
B
248 260Right-handed alpha
Helix 27
27
B
260 267Right-handed alpha
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There are 4 sheets in PDB entry 3GYQ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
31 34first strand
Strand 2
A
96 101anti-parallel
Strand 3
A
49 56anti-parallel
Strand 4
A
76 79parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
173 176first strand
Strand 2
A
144 148parallel
Strand 3
A
118 122parallel
Strand 4
A
213 218parallel
Strand 5
A
191 195parallel
Strand 6
A
234 237parallel
Strand 7
A
201 202parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
31 35first strand
Strand 2
B
96 101anti-parallel
Strand 3
B
50 56anti-parallel
Strand 4
B
76 79parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
173 176first strand
Strand 2
B
144 148parallel
Strand 3
B
118 122parallel
Strand 4
B
213 217parallel
Strand 5
B
191 195parallel
Strand 6
B
234 237parallel
Strand 7
B
201 202parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il