Analysis of interatomic Contacts of Structural Units in PDB entry:
3GYY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3GYY entry

There are 4 chains in PDB entry 3GYY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	LYS 308
B	ASP 1	GLN 311
C	ASP 1	GLN 311
D	ASP 1	GLN 311

There are 68 helices in PDB entry 3GYY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	13	29	Right-handed alpha
Helix 2	2	A	48	54	Right-handed alpha
Helix 3	3	A	63	67	Right-handed 310
Helix 4	4	A	71	79	Right-handed 310
Helix 5	5	A	86	97	Right-handed alpha
Helix 6	6	A	97	102	Right-handed alpha
Helix 7	7	A	102	110	Right-handed alpha
Helix 8	8	A	134	139	Right-handed 310
Helix 9	9	A	148	159	Right-handed alpha
Helix 10	10	A	166	168	Right-handed 310
Helix 11	11	A	169	177	Right-handed alpha
Helix 12	12	A	186	192	Right-handed alpha
Helix 13	13	A	193	197	Right-handed 310
Helix 14	14	A	217	223	Right-handed alpha
Helix 15	15	A	224	261	Right-handed alpha
Helix 16	16	A	270	279	Right-handed alpha
Helix 17	17	A	280	308	Right-handed alpha
Helix 18	18	B	13	29	Right-handed alpha
Helix 19	19	B	47	54	Right-handed alpha
Helix 20	20	B	63	68	Right-handed 310
Helix 21	21	B	71	79	Right-handed 310
Helix 22	22	B	86	97	Right-handed alpha
Helix 23	23	B	97	102	Right-handed alpha
Helix 24	24	B	102	110	Right-handed alpha
Helix 25	25	B	134	139	Right-handed 310
Helix 26	26	B	148	157	Right-handed alpha
Helix 27	27	B	166	168	Right-handed 310
Helix 28	28	B	169	177	Right-handed alpha
Helix 29	29	B	185	192	Right-handed alpha
Helix 30	30	B	193	197	Right-handed 310
Helix 31	31	B	217	222	Right-handed alpha
Helix 32	32	B	224	261	Right-handed alpha
Helix 33	33	B	270	279	Right-handed alpha
Helix 34	34	B	281	311	Right-handed alpha
Helix 35	35	C	13	30	Right-handed alpha
Helix 36	36	C	47	54	Right-handed alpha
Helix 37	37	C	63	67	Right-handed 310
Helix 38	38	C	71	79	Right-handed 310
Helix 39	39	C	86	97	Right-handed alpha
Helix 40	40	C	97	102	Right-handed alpha
Helix 41	41	C	102	110	Right-handed alpha
Helix 42	42	C	134	138	Right-handed 310
Helix 43	43	C	148	158	Right-handed alpha
Helix 44	44	C	166	176	Right-handed alpha
Helix 45	45	C	186	192	Right-handed alpha
Helix 46	46	C	193	197	Right-handed 310
Helix 47	47	C	217	223	Right-handed alpha
Helix 48	48	C	224	261	Right-handed alpha
Helix 49	49	C	270	279	Right-handed alpha
Helix 50	50	C	280	293	Right-handed alpha
Helix 51	51	C	293	311	Right-handed alpha
Helix 52	52	D	13	28	Right-handed alpha
Helix 53	53	D	44	46	Right-handed 310
Helix 54	54	D	47	54	Right-handed alpha
Helix 55	55	D	63	67	Right-handed 310
Helix 56	56	D	71	79	Right-handed 310
Helix 57	57	D	86	97	Right-handed alpha
Helix 58	58	D	97	102	Right-handed alpha
Helix 59	59	D	102	110	Right-handed alpha
Helix 60	60	D	134	139	Right-handed 310
Helix 61	61	D	148	158	Right-handed alpha
Helix 62	62	D	166	168	Right-handed 310
Helix 63	63	D	169	177	Right-handed alpha
Helix 64	64	D	186	192	Right-handed alpha
Helix 65	65	D	217	222	Right-handed alpha
Helix 66	66	D	224	259	Right-handed alpha
Helix 67	67	D	270	279	Right-handed alpha
Helix 68	68	D	280	311	Right-handed alpha

There are 8 sheets in PDB entry 3GYY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	37	first strand
Strand 2	A	3	7	parallel
Strand 3	A	59	61	parallel
Strand 4	A	208	216	anti-parallel
Strand 5	A	113	128	anti-parallel
Strand 6	A	181	185	anti-parallel
Strand 7	A	142	144	parallel
Strand 8	A	161	162	parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	37	first strand
Strand 2	A	3	7	parallel
Strand 3	A	59	61	parallel
Strand 4	A	208	216	anti-parallel
Strand 5	A	113	128	anti-parallel
Strand 6	A	200	203	anti-parallel
Strand 7	A	265	268	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	37	first strand
Strand 2	B	3	6	parallel
Strand 3	B	59	61	parallel
Strand 4	B	208	216	anti-parallel
Strand 5	B	113	123	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	162	first strand
Strand 2	B	142	144	parallel
Strand 3	B	181	184	parallel
Strand 4	B	125	128	anti-parallel
Strand 5	B	200	203	anti-parallel
Strand 6	B	265	268	parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	37	first strand
Strand 2	C	2	6	parallel
Strand 3	C	59	62	parallel
Strand 4	C	208	216	anti-parallel
Strand 5	C	113	128	anti-parallel
Strand 6	C	181	185	anti-parallel
Strand 7	C	142	144	parallel
Strand 8	C	161	162	parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	37	first strand
Strand 2	C	2	6	parallel
Strand 3	C	59	62	parallel
Strand 4	C	208	216	anti-parallel
Strand 5	C	113	128	anti-parallel
Strand 6	C	200	203	anti-parallel
Strand 7	C	265	268	parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	37	first strand
Strand 2	D	2	6	parallel
Strand 3	D	59	62	parallel
Strand 4	D	208	216	anti-parallel
Strand 5	D	113	128	anti-parallel
Strand 6	D	181	185	anti-parallel
Strand 7	D	142	144	parallel
Strand 8	D	161	162	parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	37	first strand
Strand 2	D	2	6	parallel
Strand 3	D	59	62	parallel
Strand 4	D	208	216	anti-parallel
Strand 5	D	113	128	anti-parallel
Strand 6	D	200	203	anti-parallel
Strand 7	D	265	268	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3GYY

Analysis of interatomic Contacts of Structural Units in PDB entry:
3GYY