Analysis of interatomic Contacts of Structural Units in PDB entry:
3GZ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GZ6 entry

There are 4 chains in PDB entry 3GZ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 18GLU 236
D
 G 1 C 27
B
 GLN 18GLU 236
C
 G 1 C 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3GZ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
64 78Right-handed alpha
Helix 2
2
A
112 121Right-handed alpha
Helix 3
3
A
130 134Right-handed alpha
Helix 4
4
A
141 160Right-handed alpha
Helix 5
5
A
161 167Right-handed 310
Helix 6
6
A
172 184Right-handed alpha
Helix 7
7
A
189 201Right-handed alpha
Helix 8
8
A
224 228Right-handed 310
Helix 9
9
B
64 78Right-handed alpha
Helix 10
10
B
112 121Right-handed alpha
Helix 11
11
B
130 134Right-handed alpha
Helix 12
12
B
141 160Right-handed alpha
Helix 13
13
B
161 167Right-handed 310
Helix 14
14
B
173 185Right-handed alpha
Helix 15
15
B
189 201Right-handed alpha
Helix 16
16
B
224 228Right-handed 310
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There are 6 sheets in PDB entry 3GZ6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
34 40anti-parallel
Strand 3
A
21 29anti-parallel
Strand 4
A
101 109parallel
Strand 5
A
83 92anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
21 29anti-parallel
Strand 3
A
34 40anti-parallel
Strand 4
A
125 129anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 210first strand
Strand 2
A
217 222anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
34 40anti-parallel
Strand 3
B
21 29anti-parallel
Strand 4
B
101 109parallel
Strand 5
B
83 92anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 56first strand
Strand 2
B
21 29anti-parallel
Strand 3
B
34 40anti-parallel
Strand 4
B
125 129anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 172first strand
Strand 2
B
217 222anti-parallel
Strand 3
B
203 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il