Analysis of interatomic Contacts of Structural Units in PDB entry:
3GZC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GZC entry

There are 2 chains in PDB entry 3GZC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 29GLN 444
B
 GLU 29ASP 443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3GZC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 57Right-handed alpha
Helix 2
2
A
65 87Right-handed alpha
Helix 3
3
A
89 91Right-handed 310
Helix 4
4
A
98 119Right-handed alpha
Helix 5
5
A
145 158Right-handed alpha
Helix 6
6
A
176 183Right-handed alpha
Helix 7
7
A
205 224Right-handed alpha
Helix 8
8
A
244 249Right-handed alpha
Helix 9
9
A
258 260Right-handed 310
Helix 10
10
A
287 292Right-handed 310
Helix 11
11
A
298 339Right-handed alpha
Helix 12
12
A
369 377Right-handed alpha
Helix 13
13
A
386 393Right-handed 310
Helix 14
14
A
397 403Right-handed alpha
Helix 15
15
A
406 412Right-handed alpha
Helix 16
16
A
423 444Right-handed alpha
Helix 17
17
B
43 57Right-handed alpha
Helix 18
18
B
65 87Right-handed alpha
Helix 19
19
B
89 91Right-handed 310
Helix 20
20
B
98 118Right-handed alpha
Helix 21
21
B
145 158Right-handed alpha
Helix 22
22
B
176 182Right-handed alpha
Helix 23
23
B
205 224Right-handed alpha
Helix 24
24
B
244 249Right-handed alpha
Helix 25
25
B
258 260Right-handed 310
Helix 26
26
B
288 292Right-handed 310
Helix 27
27
B
298 339Right-handed alpha
Helix 28
28
B
369 377Right-handed alpha
Helix 29
29
B
397 403Right-handed alpha
Helix 30
30
B
406 412Right-handed alpha
Helix 31
31
B
423 443Right-handed alpha
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There are 7 sheets in PDB entry 3GZC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
380 381parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
266 270anti-parallel
Strand 3
A
252 256anti-parallel
Strand 4
A
229 233parallel
Strand 5
A
188 192parallel
Strand 6
A
137 141parallel
Strand 7
A
162 166parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 345first strand
Strand 2
A
358 363anti-parallel
Strand 3
A
413 417anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
380 381parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 96first strand
Strand 2
B
266 270anti-parallel
Strand 3
B
252 256anti-parallel
Strand 4
B
229 233parallel
Strand 5
B
188 192parallel
Strand 6
B
137 141parallel
Strand 7
B
162 166parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 345first strand
Strand 2
B
358 363anti-parallel
Strand 3
B
413 417anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 389first strand
Strand 2
B
394 395anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il