Analysis of interatomic Contacts of Structural Units in PDB entry:
3GZE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GZE entry

There are 6 chains in PDB entry 3GZE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 38GLY 250
B
 GLU 37GLY 250
C
 TRP 38GLY 250
D
 GLU 37ILE 249
X
 PRO 4SER 9
Y
 PRO 2SER 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3GZE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
59 71Right-handed alpha
Helix 2
2
A
72 74Right-handed 310
Helix 3
3
A
105 120Right-handed alpha
Helix 4
4
A
122 126Right-handed 310
Helix 5
5
A
154 158Right-handed 310
Helix 6
6
A
195 199Right-handed 310
Helix 7
7
A
222 226Right-handed 310
Helix 8
8
B
59 71Right-handed alpha
Helix 9
9
B
72 74Right-handed 310
Helix 10
10
B
105 120Right-handed alpha
Helix 11
11
B
122 124Right-handed 310
Helix 12
12
B
195 199Right-handed 310
Helix 13
13
B
222 226Right-handed 310
Helix 14
14
C
59 71Right-handed alpha
Helix 15
15
C
72 74Right-handed 310
Helix 16
16
C
105 120Right-handed alpha
Helix 17
17
C
122 126Right-handed 310
Helix 18
18
C
154 158Right-handed 310
Helix 19
19
C
195 199Right-handed 310
Helix 20
20
C
222 226Right-handed 310
Helix 21
21
D
59 71Right-handed alpha
Helix 22
22
D
72 74Right-handed 310
Helix 23
23
D
105 120Right-handed alpha
Helix 24
24
D
122 126Right-handed 310
Helix 25
25
D
195 199Right-handed 310
Helix 26
26
D
222 226Right-handed 310
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There are 14 sheets in PDB entry 3GZE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
51 54anti-parallel
Strand 3
A
209 213anti-parallel
Strand 4
A
161 168anti-parallel
Strand 5
A
237 245anti-parallel
Strand 6
A
129 134anti-parallel
Strand 7
A
96 100anti-parallel
Strand 8
A
75 76anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
87 88anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
227 229anti-parallel
Strand 3
A
178 180anti-parallel
Strand 4
A
200 202anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
232 234anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 46first strand
Strand 2
B
51 54anti-parallel
Strand 3
B
209 213anti-parallel
Strand 4
B
161 168anti-parallel
Strand 5
B
238 245anti-parallel
Strand 6
B
126 133anti-parallel
Strand 7
B
97 100anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
232 234anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 202first strand
Strand 2
B
178 180anti-parallel
Strand 3
B
228 229anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 46first strand
Strand 2
C
51 54anti-parallel
Strand 3
C
209 213anti-parallel
Strand 4
C
161 168anti-parallel
Strand 5
C
236 245anti-parallel
Strand 6
C
129 135anti-parallel
Strand 7
C
96 100anti-parallel
Strand 8
C
75 76anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 80first strand
Strand 2
C
87 88anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
140 143first strand
Strand 2
C
227 229anti-parallel
Strand 3
C
178 180anti-parallel
Strand 4
C
200 202anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
174 175first strand
Strand 2
C
232 234anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
42 46first strand
Strand 2
D
51 54anti-parallel
Strand 3
D
209 213anti-parallel
Strand 4
D
161 168anti-parallel
Strand 5
D
238 245anti-parallel
Strand 6
D
129 133anti-parallel
Strand 7
D
96 100anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
174 175first strand
Strand 2
D
232 234anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
200 202first strand
Strand 2
D
178 180anti-parallel
Strand 3
D
228 229anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il