Analysis of interatomic Contacts of Structural Units in PDB entry:
3GZS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GZS entry

There are 4 chains in PDB entry 3GZS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 48VAL 363
A
 PHE 365LYS 542
B
 GLY 48VAL 363
B
 PHE 365LYS 542
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 47 helices in PDB entry 3GZS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 52Right-handed 310
Helix 2
2
A
53 61Right-handed alpha
Helix 3
3
A
72 82Right-handed alpha
Helix 4
4
A
85 90Right-handed alpha
Helix 5
5
A
99 104Right-handed alpha
Helix 6
6
A
105 109Right-handed 310
Helix 7
7
A
112 140Right-handed alpha
Helix 8
8
A
145 168Right-handed alpha
Helix 9
9
A
186 210Right-handed alpha
Helix 10
10
A
226 245Right-handed alpha
Helix 11
11
A
249 263Right-handed alpha
Helix 12
12
A
270 274Right-handed 310
Helix 13
13
A
287 295Right-handed alpha
Helix 14
14
A
302 312Right-handed alpha
Helix 15
15
A
316 321Right-handed alpha
Helix 16
16
A
359 373Right-handed alpha
Helix 17
17
A
380 396Right-handed alpha
Helix 18
18
A
399 408Right-handed alpha
Helix 19
19
A
422 426Right-handed 310
Helix 20
20
A
442 458Right-handed alpha
Helix 21
21
A
461 473Right-handed alpha
Helix 22
22
A
506 513Right-handed alpha
Helix 23
23
A
513 525Right-handed alpha
Helix 24
24
B
48 52Right-handed 310
Helix 25
25
B
53 61Right-handed alpha
Helix 26
26
B
69 71Right-handed 310
Helix 27
27
B
72 82Right-handed alpha
Helix 28
28
B
85 90Right-handed alpha
Helix 29
29
B
99 104Right-handed alpha
Helix 30
30
B
105 109Right-handed 310
Helix 31
31
B
112 140Right-handed alpha
Helix 32
32
B
145 168Right-handed alpha
Helix 33
33
B
186 210Right-handed alpha
Helix 34
34
B
226 245Right-handed alpha
Helix 35
35
B
249 263Right-handed alpha
Helix 36
36
B
270 274Right-handed 310
Helix 37
37
B
287 295Right-handed alpha
Helix 38
38
B
302 312Right-handed alpha
Helix 39
39
B
316 321Right-handed alpha
Helix 40
40
B
359 373Right-handed alpha
Helix 41
41
B
380 396Right-handed alpha
Helix 42
42
B
399 408Right-handed alpha
Helix 43
43
B
422 426Right-handed 310
Helix 44
44
B
442 458Right-handed alpha
Helix 45
45
B
461 473Right-handed alpha
Helix 46
46
B
506 513Right-handed alpha
Helix 47
47
B
513 525Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3GZS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
299 301anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
355 358anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
283 284anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
283 286anti-parallel
Strand 3
B
279 280anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 95first strand
Strand 2
B
299 301anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 277first strand
Strand 2
B
355 358anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il