Analysis of interatomic Contacts of Structural Units in PDB entry:
3GZY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GZY entry

There are 2 chains in PDB entry 3GZY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 18PRO 457
B
 MET 1PHE 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3GZY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 26Right-handed alpha
Helix 2
2
A
38 41Right-handed 310
Helix 3
3
A
42 53Right-handed alpha
Helix 4
4
A
65 67Right-handed 310
Helix 5
5
A
138 143Right-handed alpha
Helix 6
6
A
154 158Right-handed 310
Helix 7
7
A
182 187Right-handed alpha
Helix 8
8
A
190 199Right-handed alpha
Helix 9
9
A
219 230Right-handed alpha
Helix 10
10
A
231 236Right-handed alpha
Helix 11
11
A
239 247Right-handed alpha
Helix 12
12
A
252 256Right-handed 310
Helix 13
13
A
281 298Right-handed alpha
Helix 14
14
A
299 309Right-handed alpha
Helix 15
15
A
313 315Right-handed 310
Helix 16
16
A
361 376Right-handed alpha
Helix 17
17
A
382 397Right-handed alpha
Helix 18
18
A
401 404Right-handed 310
Helix 19
19
A
433 449Right-handed alpha
Helix 20
20
A
451 456Right-handed alpha
Helix 21
21
B
18 38Right-handed alpha
Helix 22
22
B
40 46Right-handed alpha
Helix 23
23
B
63 70Right-handed 310
Helix 24
24
B
83 95Right-handed alpha
Helix 25
25
B
99 103Right-handed 310
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There are 6 sheets in PDB entry 3GZY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
34 36anti-parallel
Strand 3
A
406 408anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
171 175anti-parallel
Strand 3
A
162 168anti-parallel
Strand 4
A
93 97anti-parallel
Strand 5
A
81 87anti-parallel
Strand 6
A
72 78anti-parallel
Strand 7
A
112 114anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
126 127anti-parallel
Strand 3
A
133 135anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
348 357anti-parallel
Strand 3
A
212 216anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
348 357anti-parallel
Strand 3
A
336 342anti-parallel
Strand 4
A
328 330anti-parallel
Strand 5
A
317 324anti-parallel
Strand 6
A
273 278anti-parallel
Strand 7
A
262 266anti-parallel
Strand 8
A
426 429anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 82first strand
Strand 2
B
48 56anti-parallel
Strand 3
B
163 172parallel
Strand 4
B
142 156anti-parallel
Strand 5
B
125 138anti-parallel
Strand 6
B
107 119anti-parallel
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