Analysis of interatomic Contacts of Structural Units in PDB entry:
3H0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H0J entry

There are 3 chains in PDB entry 3H0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1482ALA 2195
B
 PRO 1482LEU 2189
C
 TRP 1492LEU 2189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 94 helices in PDB entry 3H0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1489 1494Right-handed alpha
Helix 2
2
A
1494 1503Right-handed alpha
Helix 3
3
A
1507 1509Right-handed 310
Helix 4
4
A
1510 1525Right-handed alpha
Helix 5
5
A
1533 1535Right-handed 310
Helix 6
6
A
1591 1593Right-handed 310
Helix 7
7
A
1597 1615Right-handed alpha
Helix 8
8
A
1632 1636Right-handed 310
Helix 9
9
A
1648 1651Right-handed 310
Helix 10
10
A
1660 1668Right-handed alpha
Helix 11
11
A
1701 1719Right-handed alpha
Helix 12
12
A
1734 1743Right-handed alpha
Helix 13
13
A
1758 1767Right-handed alpha
Helix 14
14
A
1774 1779Right-handed alpha
Helix 15
15
A
1779 1784Right-handed alpha
Helix 16
16
A
1795 1807Right-handed alpha
Helix 17
17
A
1808 1810Right-handed 310
Helix 18
18
A
1842 1849Right-handed alpha
Helix 19
19
A
1925 1941Right-handed alpha
Helix 20
20
A
1959 1965Right-handed alpha
Helix 21
21
A
1966 1981Right-handed alpha
Helix 22
22
A
1997 2002Right-handed alpha
Helix 23
23
A
2003 2009Right-handed 310
Helix 24
24
A
2026 2035Right-handed alpha
Helix 25
25
A
2038 2043Right-handed alpha
Helix 26
26
A
2082 2096Right-handed alpha
Helix 27
27
A
2099 2106Right-handed alpha
Helix 28
28
A
2114 2144Right-handed alpha
Helix 29
29
A
2147 2157Right-handed alpha
Helix 30
30
A
2167 2177Right-handed alpha
Helix 31
31
A
2178 2188Right-handed alpha
Helix 32
32
A
2189 2191Right-handed 310
Helix 33
33
B
1489 1494Right-handed alpha
Helix 34
34
B
1494 1503Right-handed alpha
Helix 35
35
B
1507 1509Right-handed 310
Helix 36
36
B
1510 1527Right-handed alpha
Helix 37
37
B
1533 1535Right-handed 310
Helix 38
38
B
1591 1593Right-handed 310
Helix 39
39
B
1597 1615Right-handed alpha
Helix 40
40
B
1632 1636Right-handed 310
Helix 41
41
B
1648 1651Right-handed 310
Helix 42
42
B
1661 1670Right-handed alpha
Helix 43
43
B
1671 1673Right-handed 310
Helix 44
44
B
1701 1722Right-handed alpha
Helix 45
45
B
1734 1743Right-handed alpha
Helix 46
46
B
1758 1765Right-handed alpha
Helix 47
47
B
1774 1779Right-handed alpha
Helix 48
48
B
1779 1784Right-handed alpha
Helix 49
49
B
1795 1808Right-handed alpha
Helix 50
50
B
1842 1849Right-handed alpha
Helix 51
51
B
1925 1941Right-handed alpha
Helix 52
52
B
1959 1965Right-handed alpha
Helix 53
53
B
1966 1981Right-handed alpha
Helix 54
54
B
1997 2001Right-handed alpha
Helix 55
55
B
2004 2009Right-handed 310
Helix 56
56
B
2026 2035Right-handed alpha
Helix 57
57
B
2038 2043Right-handed alpha
Helix 58
58
B
2082 2087Right-handed alpha
Helix 59
59
B
2088 2095Right-handed alpha
Helix 60
60
B
2099 2106Right-handed alpha
Helix 61
61
B
2114 2142Right-handed alpha
Helix 62
62
B
2147 2157Right-handed alpha
Helix 63
63
B
2167 2178Right-handed alpha
Helix 64
64
B
2178 2188Right-handed alpha
Helix 65
65
C
1493 1503Right-handed alpha
Helix 66
66
C
1507 1509Right-handed 310
Helix 67
67
C
1510 1527Right-handed alpha
Helix 68
68
C
1533 1535Right-handed 310
Helix 69
69
C
1590 1595Right-handed 310
Helix 70
70
C
1597 1615Right-handed alpha
Helix 71
71
C
1648 1652Right-handed 310
Helix 72
72
C
1659 1670Right-handed alpha
Helix 73
73
C
1671 1673Right-handed 310
Helix 74
74
C
1701 1720Right-handed alpha
Helix 75
75
C
1734 1743Right-handed alpha
Helix 76
76
C
1758 1766Right-handed alpha
Helix 77
77
C
1774 1779Right-handed alpha
Helix 78
78
C
1779 1787Right-handed alpha
Helix 79
79
C
1795 1807Right-handed alpha
Helix 80
80
C
1808 1810Right-handed 310
Helix 81
81
C
1842 1849Right-handed alpha
Helix 82
82
C
1925 1941Right-handed alpha
Helix 83
83
C
1959 1965Right-handed alpha
Helix 84
84
C
1966 1981Right-handed alpha
Helix 85
85
C
1997 2002Right-handed alpha
Helix 86
86
C
2003 2008Right-handed 310
Helix 87
87
C
2026 2035Right-handed alpha
Helix 88
88
C
2036 2044Right-handed alpha
Helix 89
89
C
2082 2096Right-handed alpha
Helix 90
90
C
2099 2106Right-handed alpha
Helix 91
91
C
2117 2142Right-handed alpha
Helix 92
92
C
2147 2157Right-handed alpha
Helix 93
93
C
2167 2177Right-handed alpha
Helix 94
94
C
2178 2188Right-handed alpha
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There are 26 sheets in PDB entry 3H0J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1550 1553first strand
Strand 2
A
1537 1544anti-parallel
Strand 3
A
1564 1571anti-parallel
Strand 4
A
1580 1587anti-parallel
Strand 5
A
1618 1622parallel
Strand 6
A
1724 1728parallel
Strand 7
A
1746 1749parallel
Strand 8
A
1791 1793parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1595 1596first strand
Strand 2
A
1626 1627parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1640 1643first strand
Strand 2
A
1653 1659anti-parallel
Strand 3
A
1686 1693anti-parallel
Strand 4
A
1675 1681anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1732 1733first strand
Strand 2
A
1754 1755parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1850 1852first strand
Strand 2
A
1855 1857anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1867 1869first strand
Strand 2
A
1877 1884anti-parallel
Strand 3
A
1887 1894anti-parallel
Strand 4
A
1947 1950parallel
Strand 5
A
1985 1989parallel
Strand 6
A
2012 2017parallel
Strand 7
A
2111 2113parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1899 1903first strand
Strand 2
A
1915 1919anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1923 1924first strand
Strand 2
A
1955 1956parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1994 1996first strand
Strand 2
A
2021 2023parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1550 1553first strand
Strand 2
B
1537 1544anti-parallel
Strand 3
B
1564 1573anti-parallel
Strand 4
B
1576 1587anti-parallel
Strand 5
B
1618 1622parallel
Strand 6
B
1724 1728parallel
Strand 7
B
1746 1749parallel
Strand 8
B
1791 1793parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1595 1596first strand
Strand 2
B
1626 1627parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1640 1643first strand
Strand 2
B
1653 1659anti-parallel
Strand 3
B
1685 1693anti-parallel
Strand 4
B
1675 1682anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1732 1733first strand
Strand 2
B
1754 1755parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1850 1852first strand
Strand 2
B
1855 1857anti-parallel
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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1867 1869first strand
Strand 2
B
1877 1884anti-parallel
Strand 3
B
1887 1894anti-parallel
Strand 4
B
1947 1950parallel
Strand 5
B
1985 1989parallel
Strand 6
B
2014 2017parallel
Strand 7
B
2111 2113parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1899 1903first strand
Strand 2
B
1915 1919anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1923 1924first strand
Strand 2
B
1955 1956parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1994 1996first strand
Strand 2
B
2021 2023parallel
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There are 8 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1550 1553first strand
Strand 2
C
1537 1544anti-parallel
Strand 3
C
1564 1571anti-parallel
Strand 4
C
1580 1587anti-parallel
Strand 5
C
1618 1622parallel
Strand 6
C
1724 1728parallel
Strand 7
C
1745 1749parallel
Strand 8
C
1791 1793parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1640 1641first strand
Strand 2
C
1656 1658anti-parallel
Strand 3
C
1686 1693anti-parallel
Strand 4
C
1675 1681anti-parallel
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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1732 1733first strand
Strand 2
C
1754 1755parallel
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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1850 1852first strand
Strand 2
C
1855 1857anti-parallel
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There are 7 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1867 1869first strand
Strand 2
C
1877 1884anti-parallel
Strand 3
C
1887 1894anti-parallel
Strand 4
C
1947 1950parallel
Strand 5
C
1985 1989parallel
Strand 6
C
2014 2017parallel
Strand 7
C
2111 2113parallel
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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1899 1903first strand
Strand 2
C
1915 1919anti-parallel
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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1923 1924first strand
Strand 2
C
1955 1956parallel
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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1994 1996first strand
Strand 2
C
2021 2023parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il