Analysis of interatomic Contacts of Structural Units in PDB entry:
3H1D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H1D entry

There is 1 chain in PDB entry 3H1D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3980GLU 4366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3H1D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3983 3988Right-handed 310
Helix 2
2
A
3993 4009Right-handed alpha
Helix 3
3
A
4022 4024Right-handed 310
Helix 4
4
A
4025 4035Right-handed alpha
Helix 5
5
A
4040 4044Right-handed 310
Helix 6
6
A
4060 4073Right-handed alpha
Helix 7
7
A
4074 4079Right-handed 310
Helix 8
8
A
4102 4121Right-handed alpha
Helix 9
9
A
4129 4138Right-handed alpha
Helix 10
10
A
4142 4144Right-handed 310
Helix 11
11
A
4145 4150Right-handed alpha
Helix 12
12
A
4150 4163Right-handed alpha
Helix 13
13
A
4164 4168Right-handed 310
Helix 14
14
A
4185 4190Right-handed 310
Helix 15
15
A
4202 4216Right-handed alpha
Helix 16
16
A
4219 4234Right-handed alpha
Helix 17
17
A
4235 4240Right-handed alpha
Helix 18
18
A
4243 4253Right-handed alpha
Helix 19
19
A
4258 4265Right-handed alpha
Helix 20
20
A
4275 4288Right-handed alpha
Helix 21
21
A
4289 4302Right-handed alpha
Helix 22
22
A
4310 4314Right-handed 310
Helix 23
23
A
4340 4342Right-handed 310
Helix 24
24
A
4352 4366Right-handed alpha
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There are 4 sheets in PDB entry 3H1D. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4016 4021first strand
Strand 2
A
4045 4050parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4081 4083first strand
Strand 2
A
4090 4093anti-parallel
Strand 3
A
4127 4128parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4181 4183first strand
Strand 2
A
4172 4175anti-parallel
Strand 3
A
4195 4197anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4266 4269first strand
Strand 2
A
4323 4328parallel
Strand 3
A
4344 4348parallel
Strand 4
A
4337 4339anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il