Analysis of interatomic Contacts of Structural Units in PDB entry:
3H1Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H1Y entry

There is 1 chain in PDB entry 3H1Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -1LEU 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3H1Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 24Right-handed alpha
Helix 2
2
A
58 65Right-handed alpha
Helix 3
3
A
65 71Right-handed alpha
Helix 4
4
A
71 78Right-handed alpha
Helix 5
5
A
101 115Right-handed alpha
Helix 6
6
A
150 159Right-handed alpha
Helix 7
7
A
160 164Right-handed 310
Helix 8
8
A
165 174Right-handed alpha
Helix 9
9
A
176 189Right-handed alpha
Helix 10
10
A
191 207Right-handed alpha
Helix 11
11
A
213 222Right-handed alpha
Helix 12
12
A
227 230Right-handed 310
Helix 13
13
A
231 235Right-handed alpha
Helix 14
14
A
283 290Right-handed alpha
Helix 15
15
A
297 301Right-handed 310
Helix 16
16
A
371 374Right-handed 310
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There are 6 sheets in PDB entry 3H1Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 3first strand
Strand 2
A
366 369anti-parallel
Strand 3
A
341 354anti-parallel
Strand 4
A
376 388anti-parallel
Strand 5
A
333 335anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 308first strand
Strand 2
A
311 313anti-parallel
Strand 3
A
322 327anti-parallel
Strand 4
A
376 388anti-parallel
Strand 5
A
341 354anti-parallel
Strand 6
A
357 361anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
84 90anti-parallel
Strand 4
A
255 266anti-parallel
Strand 5
A
142 148anti-parallel
Strand 6
A
236 241anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
84 90anti-parallel
Strand 4
A
255 266anti-parallel
Strand 5
A
135 138anti-parallel
Strand 6
A
246 248anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
56 57anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
273 274anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il