Analysis of interatomic Contacts of Structural Units in PDB entry:
3H38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H38 entry

There is 1 chain in PDB entry 3H38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3H38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 15Right-handed alpha
Helix 2
2
A
16 33Right-handed alpha
Helix 3
3
A
41 50Right-handed alpha
Helix 4
4
A
63 73Right-handed alpha
Helix 5
5
A
121 128Right-handed alpha
Helix 6
6
A
131 135Right-handed 310
Helix 7
7
A
141 145Right-handed 310
Helix 8
8
A
153 160Right-handed alpha
Helix 9
9
A
169 174Right-handed alpha
Helix 10
10
A
176 188Right-handed alpha
Helix 11
11
A
193 206Right-handed alpha
Helix 12
12
A
207 212Right-handed alpha
Helix 13
13
A
213 226Right-handed alpha
Helix 14
14
A
229 240Right-handed alpha
Helix 15
15
A
241 247Right-handed alpha
Helix 16
16
A
253 275Right-handed alpha
Helix 17
17
A
278 288Right-handed alpha
Helix 18
18
A
292 303Right-handed alpha
Helix 19
19
A
308 329Right-handed alpha
Helix 20
20
A
332 335Right-handed 310
Helix 21
21
A
336 341Right-handed alpha
Helix 22
22
A
344 353Right-handed alpha
Helix 23
23
A
356 372Right-handed alpha
Helix 24
24
A
380 385Right-handed alpha
Helix 25
25
A
391 408Right-handed alpha
Helix 26
26
A
414 424Right-handed alpha
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There are 3 sheets in PDB entry 3H38. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
147 149anti-parallel
Strand 3
A
137 139anti-parallel
Strand 4
A
37 40anti-parallel
Strand 5
A
56 60anti-parallel
Strand 6
A
97 102parallel
Strand 7
A
87 92anti-parallel
Strand 8
A
77 80anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
116 117anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
191 192parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il