Analysis of interatomic Contacts of Structural Units in PDB entry:
3H4V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3H4V entry

There are 8 chains in PDB entry 3H4V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	ALA 288
B	THR 5	ALA 288
C	VAL 6	ALA 288
D	THR 5	ALA 288
E	VAL 6	ALA 288
F	THR 5	ALA 288
G	VAL 6	ALA 288
H	THR 5	ALA 288

There are 93 helices in PDB entry 3H4V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	16	28	Right-handed alpha
Helix 2	2	A	40	55	Right-handed alpha
Helix 3	3	A	84	101	Right-handed alpha
Helix 4	4	A	133	148	Right-handed alpha
Helix 5	5	A	148	164	Right-handed alpha
Helix 6	6	A	166	170	Right-handed 310
Helix 7	7	A	191	213	Right-handed alpha
Helix 8	8	A	214	216	Right-handed 310
Helix 9	9	A	234	243	Right-handed alpha
Helix 10	10	A	253	266	Right-handed alpha
Helix 11	11	A	267	270	Right-handed 310
Helix 12	12	A	282	286	Right-handed 310
Helix 13	13	B	16	28	Right-handed alpha
Helix 14	14	B	40	55	Right-handed alpha
Helix 15	15	B	84	101	Right-handed alpha
Helix 16	16	B	133	148	Right-handed alpha
Helix 17	17	B	148	164	Right-handed alpha
Helix 18	18	B	166	170	Right-handed 310
Helix 19	19	B	191	213	Right-handed alpha
Helix 20	20	B	214	216	Right-handed 310
Helix 21	21	B	234	244	Right-handed alpha
Helix 22	22	B	253	266	Right-handed alpha
Helix 23	23	B	267	270	Right-handed 310
Helix 24	24	B	282	286	Right-handed 310
Helix 25	25	C	16	28	Right-handed alpha
Helix 26	26	C	40	55	Right-handed alpha
Helix 27	27	C	84	101	Right-handed alpha
Helix 28	28	C	133	148	Right-handed alpha
Helix 29	29	C	148	164	Right-handed alpha
Helix 30	30	C	166	170	Right-handed 310
Helix 31	31	C	191	213	Right-handed alpha
Helix 32	32	C	241	245	Right-handed 310
Helix 33	33	C	253	266	Right-handed alpha
Helix 34	34	C	267	270	Right-handed 310
Helix 35	35	C	282	286	Right-handed 310
Helix 36	36	D	16	28	Right-handed alpha
Helix 37	37	D	40	55	Right-handed alpha
Helix 38	38	D	84	101	Right-handed alpha
Helix 39	39	D	133	148	Right-handed alpha
Helix 40	40	D	148	165	Right-handed alpha
Helix 41	41	D	166	170	Right-handed 310
Helix 42	42	D	191	213	Right-handed alpha
Helix 43	43	D	214	216	Right-handed 310
Helix 44	44	D	237	243	Right-handed alpha
Helix 45	45	D	253	266	Right-handed alpha
Helix 46	46	D	267	270	Right-handed 310
Helix 47	47	D	282	286	Right-handed 310
Helix 48	48	E	16	28	Right-handed alpha
Helix 49	49	E	40	55	Right-handed alpha
Helix 50	50	E	84	101	Right-handed alpha
Helix 51	51	E	131	148	Right-handed alpha
Helix 52	52	E	148	164	Right-handed alpha
Helix 53	53	E	191	213	Right-handed alpha
Helix 54	54	E	214	216	Right-handed 310
Helix 55	55	E	234	243	Right-handed alpha
Helix 56	56	E	253	266	Right-handed alpha
Helix 57	57	E	267	270	Right-handed 310
Helix 58	58	E	282	286	Right-handed 310
Helix 59	59	F	16	28	Right-handed alpha
Helix 60	60	F	40	55	Right-handed alpha
Helix 61	61	F	84	101	Right-handed alpha
Helix 62	62	F	133	148	Right-handed alpha
Helix 63	63	F	148	164	Right-handed alpha
Helix 64	64	F	166	170	Right-handed 310
Helix 65	65	F	191	213	Right-handed alpha
Helix 66	66	F	214	216	Right-handed 310
Helix 67	67	F	234	243	Right-handed alpha
Helix 68	68	F	253	265	Right-handed alpha
Helix 69	69	F	266	270	Right-handed 310
Helix 70	70	F	282	286	Right-handed 310
Helix 71	71	G	16	29	Right-handed alpha
Helix 72	72	G	40	55	Right-handed alpha
Helix 73	73	G	84	101	Right-handed alpha
Helix 74	74	G	134	148	Right-handed alpha
Helix 75	75	G	148	165	Right-handed alpha
Helix 76	76	G	181	186	Right-handed 310
Helix 77	77	G	191	213	Right-handed alpha
Helix 78	78	G	214	216	Right-handed 310
Helix 79	79	G	253	266	Right-handed alpha
Helix 80	80	G	267	270	Right-handed 310
Helix 81	81	G	282	286	Right-handed 310
Helix 82	82	H	16	29	Right-handed alpha
Helix 83	83	H	40	55	Right-handed alpha
Helix 84	84	H	85	101	Right-handed alpha
Helix 85	85	H	133	148	Right-handed alpha
Helix 86	86	H	148	165	Right-handed alpha
Helix 87	87	H	166	170	Right-handed 310
Helix 88	88	H	181	186	Right-handed 310
Helix 89	89	H	191	212	Right-handed alpha
Helix 90	90	H	241	245	Right-handed 310
Helix 91	91	H	253	266	Right-handed alpha
Helix 92	92	H	267	270	Right-handed 310
Helix 93	93	H	282	286	Right-handed 310

There are 9 sheets in PDB entry 3H4V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	63	first strand
Strand 2	A	32	37	parallel
Strand 3	A	8	11	parallel
Strand 4	A	105	108	parallel
Strand 5	A	175	179	parallel
Strand 6	A	218	224	parallel
Strand 7	A	276	279	parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	63	first strand
Strand 2	B	32	37	parallel
Strand 3	B	8	11	parallel
Strand 4	B	105	108	parallel
Strand 5	B	175	179	parallel
Strand 6	B	218	224	parallel
Strand 7	B	276	279	parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	63	first strand
Strand 2	C	32	37	parallel
Strand 3	C	8	11	parallel
Strand 4	C	105	108	parallel
Strand 5	C	174	179	parallel
Strand 6	C	217	224	parallel
Strand 7	C	276	279	parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	63	first strand
Strand 2	D	32	37	parallel
Strand 3	D	8	11	parallel
Strand 4	D	105	108	parallel
Strand 5	D	175	179	parallel
Strand 6	D	218	224	parallel
Strand 7	D	276	279	parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	63	first strand
Strand 2	E	32	37	parallel
Strand 3	E	8	11	parallel
Strand 4	E	105	108	parallel
Strand 5	E	175	179	parallel
Strand 6	E	218	224	parallel
Strand 7	E	276	279	parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	63	first strand
Strand 2	F	32	37	parallel
Strand 3	F	8	11	parallel
Strand 4	F	105	108	parallel
Strand 5	F	175	179	parallel
Strand 6	F	218	224	parallel
Strand 7	F	276	279	parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	63	first strand
Strand 2	G	32	37	parallel
Strand 3	G	8	11	parallel
Strand 4	G	105	108	parallel
Strand 5	G	175	179	parallel
Strand 6	G	218	224	parallel
Strand 7	G	277	279	parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	63	first strand
Strand 2	H	32	37	parallel
Strand 3	H	8	11	parallel
Strand 4	H	105	108	parallel
Strand 5	H	174	179	parallel
Strand 6	H	217	224	parallel
Strand 7	H	276	279	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	70	71	first strand
Strand 2	H	83	84	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3H4V

Analysis of interatomic Contacts of Structural Units in PDB entry:
3H4V