Analysis of interatomic Contacts of Structural Units in PDB entry:
3H4Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3H4Z entry

There are 3 chains in PDB entry 3H4Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1	GLN 1215
B	LYS 1	GLN 1215
C	ILE 2	ASN 1214

There are 69 helices in PDB entry 3H4Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	16	32	Right-handed alpha
Helix 2	2	A	42	51	Right-handed alpha
Helix 3	3	A	52	54	Right-handed 310
Helix 4	4	A	64	74	Right-handed alpha
Helix 5	5	A	82	87	Right-handed alpha
Helix 6	6	A	88	90	Right-handed 310
Helix 7	7	A	91	97	Right-handed alpha
Helix 8	8	A	131	141	Right-handed alpha
Helix 9	9	A	153	164	Right-handed alpha
Helix 10	10	A	185	201	Right-handed alpha
Helix 11	11	A	209	219	Right-handed alpha
Helix 12	12	A	228	230	Right-handed 310
Helix 13	13	A	231	237	Right-handed alpha
Helix 14	14	A	272	283	Right-handed alpha
Helix 15	15	A	286	297	Right-handed alpha
Helix 16	16	A	304	311	Right-handed alpha
Helix 17	17	A	314	327	Right-handed alpha
Helix 18	18	A	335	353	Right-handed alpha
Helix 19	19	A	356	368	Right-handed alpha
Helix 20	20	A	1021	1043	Right-handed alpha
Helix 21	21	A	1080	1084	Right-handed 310
Helix 22	22	A	1176	1189	Right-handed alpha
Helix 23	23	A	1192	1211	Right-handed alpha
Helix 24	24	B	16	29	Right-handed alpha
Helix 25	25	B	42	51	Right-handed alpha
Helix 26	26	B	52	54	Right-handed 310
Helix 27	27	B	63	65	Right-handed 310
Helix 28	28	B	66	73	Right-handed alpha
Helix 29	29	B	82	87	Right-handed alpha
Helix 30	30	B	90	96	Right-handed alpha
Helix 31	31	B	128	130	Right-handed 310
Helix 32	32	B	131	141	Right-handed alpha
Helix 33	33	B	153	164	Right-handed alpha
Helix 34	34	B	185	201	Right-handed alpha
Helix 35	35	B	209	219	Right-handed alpha
Helix 36	36	B	228	230	Right-handed 310
Helix 37	37	B	231	238	Right-handed alpha
Helix 38	38	B	272	283	Right-handed alpha
Helix 39	39	B	286	297	Right-handed alpha
Helix 40	40	B	304	312	Right-handed alpha
Helix 41	41	B	314	327	Right-handed alpha
Helix 42	42	B	335	353	Right-handed alpha
Helix 43	43	B	356	369	Right-handed alpha
Helix 44	44	B	1021	1043	Right-handed alpha
Helix 45	45	B	1080	1084	Right-handed 310
Helix 46	46	B	1176	1211	Right-handed alpha
Helix 47	47	C	18	27	Right-handed alpha
Helix 48	48	C	27	32	Right-handed alpha
Helix 49	49	C	42	51	Right-handed alpha
Helix 50	50	C	66	73	Right-handed alpha
Helix 51	51	C	82	89	Right-handed alpha
Helix 52	52	C	90	97	Right-handed alpha
Helix 53	53	C	131	141	Right-handed alpha
Helix 54	54	C	153	162	Right-handed alpha
Helix 55	55	C	163	165	Right-handed 310
Helix 56	56	C	185	201	Right-handed alpha
Helix 57	57	C	209	219	Right-handed alpha
Helix 58	58	C	228	230	Right-handed 310
Helix 59	59	C	231	237	Right-handed alpha
Helix 60	60	C	272	283	Right-handed alpha
Helix 61	61	C	288	297	Right-handed alpha
Helix 62	62	C	304	312	Right-handed alpha
Helix 63	63	C	314	327	Right-handed alpha
Helix 64	64	C	335	353	Right-handed alpha
Helix 65	65	C	356	368	Right-handed alpha
Helix 66	66	C	1021	1043	Right-handed alpha
Helix 67	67	C	1080	1082	Right-handed 310
Helix 68	68	C	1176	1191	Right-handed alpha
Helix 69	69	C	1193	1211	Right-handed alpha

There are 28 sheets in PDB entry 3H4Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	7	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	106	111	anti-parallel
Strand 6	A	301	302	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	7	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	328	329	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	102	103	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	222	227	parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	242	245	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	171	first strand
Strand 2	A	176	182	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	250	first strand
Strand 2	A	253	254	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1049	1051	first strand
Strand 2	A	1068	1079	anti-parallel
Strand 3	A	1054	1059	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1049	1051	first strand
Strand 2	A	1068	1079	anti-parallel
Strand 3	A	1112	1120	anti-parallel
Strand 4	A	1128	1135	anti-parallel
Strand 5	A	1165	1169	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1085	1086	first strand
Strand 2	A	1098	1107	anti-parallel
Strand 3	A	1091	1095	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1085	1086	first strand
Strand 2	A	1098	1107	anti-parallel
Strand 3	A	1138	1146	anti-parallel
Strand 4	A	1152	1159	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	7	10	parallel
Strand 3	B	59	62	parallel
Strand 4	B	258	266	anti-parallel
Strand 5	B	105	111	anti-parallel
Strand 6	B	301	302	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	7	10	parallel
Strand 3	B	59	62	parallel
Strand 4	B	258	266	anti-parallel
Strand 5	B	328	329	parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	222	227	parallel
Strand 3	B	114	118	anti-parallel
Strand 4	B	242	245	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	171	first strand
Strand 2	B	176	182	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	250	first strand
Strand 2	B	253	254	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1049	1051	first strand
Strand 2	B	1069	1079	anti-parallel
Strand 3	B	1054	1058	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1049	1051	first strand
Strand 2	B	1069	1079	anti-parallel
Strand 3	B	1112	1121	anti-parallel
Strand 4	B	1128	1136	anti-parallel
Strand 5	B	1164	1168	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1085	1086	first strand
Strand 2	B	1098	1106	anti-parallel
Strand 3	B	1094	1095	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1085	1086	first strand
Strand 2	B	1098	1106	anti-parallel
Strand 3	B	1139	1146	anti-parallel
Strand 4	B	1156	1159	anti-parallel

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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	C	6	10	parallel
Strand 3	C	59	63	parallel
Strand 4	C	258	266	anti-parallel
Strand 5	C	106	111	anti-parallel
Strand 6	C	301	302	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	C	6	10	parallel
Strand 3	C	59	63	parallel
Strand 4	C	258	266	anti-parallel
Strand 5	C	328	329	parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	222	227	parallel
Strand 3	C	114	117	anti-parallel
Strand 4	C	243	245	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	171	first strand
Strand 2	C	176	182	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	250	first strand
Strand 2	C	253	254	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1049	1051	first strand
Strand 2	C	1070	1079	anti-parallel
Strand 3	C	1054	1057	anti-parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1049	1051	first strand
Strand 2	C	1070	1079	anti-parallel
Strand 3	C	1112	1120	anti-parallel
Strand 4	C	1128	1135	anti-parallel
Strand 5	C	1165	1169	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1084	1086	first strand
Strand 2	C	1098	1107	anti-parallel
Strand 3	C	1091	1095	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1084	1086	first strand
Strand 2	C	1098	1107	anti-parallel
Strand 3	C	1139	1146	anti-parallel
Strand 4	C	1154	1159	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3H4Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
3H4Z