Analysis of interatomic Contacts of Structural Units in PDB entry:
3H53


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H53 entry

There are 2 chains in PDB entry 3H53 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 18LYS 404
B
 LEU 18LYS 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 3H53. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 37Right-handed alpha
Helix 2
2
A
51 65Right-handed alpha
Helix 3
3
A
66 71Right-handed alpha
Helix 4
4
A
101 112Right-handed alpha
Helix 5
5
A
134 136Right-handed 310
Helix 6
6
A
137 149Right-handed alpha
Helix 7
7
A
161 179Right-handed alpha
Helix 8
8
A
188 193Right-handed alpha
Helix 9
9
A
201 209Right-handed alpha
Helix 10
10
A
221 235Right-handed alpha
Helix 11
11
A
235 243Right-handed alpha
Helix 12
12
A
262 276Right-handed alpha
Helix 13
13
A
290 298Right-handed alpha
Helix 14
14
A
299 307Right-handed alpha
Helix 15
15
A
356 359Right-handed 310
Helix 16
16
B
32 37Right-handed alpha
Helix 17
17
B
51 65Right-handed alpha
Helix 18
18
B
101 112Right-handed alpha
Helix 19
19
B
137 148Right-handed alpha
Helix 20
20
B
161 180Right-handed alpha
Helix 21
21
B
188 193Right-handed alpha
Helix 22
22
B
201 209Right-handed alpha
Helix 23
23
B
221 235Right-handed alpha
Helix 24
24
B
235 240Right-handed alpha
Helix 25
25
B
241 243Right-handed 310
Helix 26
26
B
262 276Right-handed alpha
Helix 27
27
B
290 298Right-handed alpha
Helix 28
28
B
299 307Right-handed alpha
Helix 29
29
B
354 359Right-handed 310
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There are 8 sheets in PDB entry 3H53. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
211 213parallel
Strand 3
A
184 187parallel
Strand 4
A
152 156parallel
Strand 5
A
115 121parallel
Strand 6
A
74 76parallel
Strand 7
A
28 31parallel
Strand 8
A
280 282parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
91 93anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 319first strand
Strand 2
A
324 330anti-parallel
Strand 3
A
336 342anti-parallel
Strand 4
A
395 402anti-parallel
Strand 5
A
366 370anti-parallel
Strand 6
A
376 380anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 354first strand
Strand 2
A
385 390anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 250first strand
Strand 2
B
211 213parallel
Strand 3
B
184 187parallel
Strand 4
B
152 156parallel
Strand 5
B
115 121parallel
Strand 6
B
74 76parallel
Strand 7
B
28 31parallel
Strand 8
B
280 282parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 85first strand
Strand 2
B
91 93anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 319first strand
Strand 2
B
324 330anti-parallel
Strand 3
B
336 342anti-parallel
Strand 4
B
395 402anti-parallel
Strand 5
B
366 370anti-parallel
Strand 6
B
376 380anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 353first strand
Strand 2
B
386 390anti-parallel
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