Analysis of interatomic Contacts of Structural Units in PDB entry:
3H5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3H5C entry

There are 2 chains in PDB entry 3H5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 40LEU 423
B
 SER 49ASN 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3H5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 71Right-handed alpha
Helix 2
2
A
80 95Right-handed alpha
Helix 3
3
A
97 107Right-handed alpha
Helix 4
4
A
115 117Right-handed 310
Helix 5
5
A
118 132Right-handed alpha
Helix 6
6
A
158 165Right-handed alpha
Helix 7
7
A
176 192Right-handed alpha
Helix 8
8
A
287 292Right-handed alpha
Helix 9
9
A
293 295Right-handed 310
Helix 10
10
A
296 306Right-handed alpha
Helix 11
11
A
326 334Right-handed alpha
Helix 12
12
A
337 341Right-handed 310
Helix 13
13
B
176 182Right-handed alpha
Helix 14
14
B
244 251Right-handed alpha
Helix 15
15
B
283 292Right-handed alpha
Helix 16
16
B
351 360Right-handed alpha
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There are 7 sheets in PDB entry 3H5C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
411 417anti-parallel
Strand 3
A
399 405anti-parallel
Strand 4
A
275 282anti-parallel
Strand 5
A
264 270anti-parallel
Strand 6
A
241 259anti-parallel
Strand 7
A
231 238anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
411 417anti-parallel
Strand 3
A
399 405anti-parallel
Strand 4
A
275 282anti-parallel
Strand 5
A
264 270anti-parallel
Strand 6
A
241 259anti-parallel
Strand 7
A
308 317anti-parallel
Strand 8
A
392 394parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 147first strand
Strand 2
A
209 217anti-parallel
Strand 3
A
360 369parallel
Strand 4
A
319 325anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
109 111anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
126 127anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 155first strand
Strand 2
B
161 169anti-parallel
Strand 3
B
172 175anti-parallel
Strand 4
B
223 227anti-parallel
Strand 5
B
200 209anti-parallel
Strand 6
B
187 190anti-parallel
Strand 7
B
151 155anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 261first strand
Strand 2
B
278 282anti-parallel
Strand 3
B
299 303anti-parallel
Strand 4
B
342 347anti-parallel
Strand 5
B
324 331anti-parallel
Strand 6
B
316 321anti-parallel
Strand 7
B
258 261anti-parallel
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